Publications (110)

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Chapter 110 – The Role of Ethyl-β-D-Glucoside in the Pleasantness of Sea Buckthorn Juice
(2014)
Sandell M A, Laaksonen O A, Puputti S, Kallio H P, Yang B
A comparison of capture antibody fragments in cardiac troponin I immunoassay.
(2013)
Clinical Biochemistry
Hyytiä Heidi, Järvenpää Marja-Leena, Ristiniemi Noora, Lövgren Timo, Pettersson Kim
Effect of carbodiimide (EDC) on the bond stability of etch-and-rinse adhesive systems
(2013)
Dental Materials
Mazzoni A, Angeloni V, Apolonio FM, Scotti N, Tjäderhane L, Tezvergil-Mutluay A, Di Lenarda R, Tay FR, Pashley DH, Breschi L
Flavodiiron proteins Flv1 and Flv3 enable cyanobacterial growth and photosynthesis under fluctuating light
(2013)
Proceedings of the National Academy of Sciences of the United States of America
Allahverdiyeva Y, Mustila H, Ermakova M, Bersanini L, Richaud P, Ajlani G, Battchikova N, Cournac L, Aro EM
Group 2 sigma factor mutant ΔsigCDE of the cyanobacterium Synechocystis sp. PCC 6803 reveals functionality of both carotenoids and flavodiiron proteins in photoprotection of Photosystem II
(2013)
Plant and Cell Physiology
Kaisa Hakkila, Taras Antal, Liisa Gunnelius, Juha Kurkela, Hans C P Matthijs, Esa Tyystjärvi, Taina Tyystjärvi
Lack of decorin expression by human bladder cancer cells offers new tools in the therapy of urothelial malignancies.
(2013)
PLoS ONE
Sainio A, Nyman M, Lund R, Vuorikoski S, Boström P, Laato M, Boström PJ, Järveläinen H
Lipases in the Regioselective Preparation of Glyceric Acid Esters of Methyl Glycosides
(2013)
European Journal of Organic Chemistry
Sundell Riku, Kanerva Liisa T
Localization of decorin gene expression in normal human breast tissue and in benign and malignant tumors of the human breast.
(2013)
Histochemistry and Cell Biology
Boström P, Sainio A, Kakko T, Savontaus M, Söderström M, Järveläinen H
Membrane-integral pyrophosphatase subfamily capable of translocating both Na+ and H+
(2013)
Proceedings of the National Academy of Sciences of the United States of America
Luoto HH, Baykov AA, Lahti R, Malinen AM
Multiparametric Homogeneous Method for Identification of Ligand Binding to G Protein-Coupled Receptors: Receptor-Ligand Binding and beta-Arrestin Assay
(2013)
Analytical Chemistry
Kopra K, Kainulainen M, Mikkonen P, Rozwandowicz-Jansen A, Hanninen P, Harma H
Multiresidue Detection of Fluoroquinolones: Specificity Engineering of a Recombinant Antibody with Oligonucleotide-Directed Mutagenesis
(2013)
Journal of Agricultural and Food Chemistry
Leivo J, Lamminmäki U, Lövgren T, Vehniäinen M
Prenatal Metformin Exposure in Mice Programs the Metabolic Phenotype of the Offspring during a High Fat Diet at Adulthood
(2013)
PLoS ONE
Salomaki H, Vahatalo LH, Laurila K, Jappinen NT, Penttinen AM, Ailanen L, Ilyasizadeh J, Pesonen U, Koulu M
Proviral Integration Site for Moloney Murine Leukemia Virus (PIM) Kinases Promote Human T Helper 1 Cell Differentiation
(2013)
Journal of Biological Chemistry
Tahvanainen J, Kyläniemi MK, Kanduri K, Gupta B, Lähteenmäki H, Kallonen T, Rajavuori A, Rasool O, Koskinen PJ, Rao KVS, Lähdesmäki H, Lahesmaa R
Pyrophosphate-Fueled Na+ and H+ Transport in Prokaryotes
(2013)
Microbiology and Molecular Biology Reviews
Baykov AA, Malinen AM, Luoto HH, Lahti R
Quantitative PCR detection and improved sample preparation of microcystin-producing Anabaena, Microcystis and Planktothrix
(2013)
Ecotoxicology and Environmental Safety
Hautala H, Lamminmäki U, Spoof L, Nybom S, Meriluoto J, Vehniäinen M
Reusable ω-transaminase sol-gel catalyst for the preparation of amine enantiomers
(2013)
Process Biochemistry
Mari Päiviö, Liisa T Kanerva
Sensory quality and compositional characteristics of blackcurrant juices produced by different processes
(2013)
Food Chemistry
Oskar Laaksonen, Leenamaija Mäkilä, Risto Tahvonen, Heikki Kallio, Baoru Yang
Strategies to prevent hydrolytic degradation of the hybrid layer – a review
(2013)
Dental Materials
Tjäderhane L, Nascimento FD, Breschi L, Mazzoni A, Tersariol ILS, Geraldeli S, Tezvergil-Mutluay A, Carrilho MR, Carvalho RM, Tay FR, Pashley DH
Structural and Functional Analysis of Angucycline C-6 Ketoreductase LanV Involved in Landomycin Biosynthesis
(2013)
Biochemistry
Pasi Paananen, Pekka Patrikainen, Pauli Kallio, Pekka Mäntsälä, Jarmo Niemi, Laila Niiranen, Mikko Metsä-Ketelä
Structural basis for C-ribosylation in the alnumycin A biosynthetic pathway
(2013)
Proceedings of the National Academy of Sciences of the United States of America
Terhi Oja, Laila Niiranen, Tatyana Sandalova, Karel D Klika, Jarmo Niemi, Pekka Mäntsälä, Gunter Schneider, Mikko Metsä-Ketelä
The associations of oxidized high-density lipoprotein lipids with risk factors for atherosclerosis: The Cardiovascular Risk in Young Finns Study
(2013)
Free Radical Biology and Medicine
Kresanov P, Ahotupa M, Vasankari T, Kaikkonen J, Kähönen M, Lehtimäki T, Viikari J, Raitakari O
The effect of dimethyl sulfoxide (DMSO) on dentin bonding and nanoleakage of etch-and-rinse adhesives.
(2013)
Dental Materials
Tjäderhane L, Mehtälä P, Scaffa P, Vidal C, Pääkkönen V, Breschi L, Hebling J, Tay FR, Nascimento FD, Pashley DH, Carrilho MR
Tissue Oxygen Demand in Regulation of the Behavior of the Cells in the Vasculature
(2013)
Microcirculation
Barvitenko NN, Aslam M, Filosa J, Matteucci E, Nikinmaa M, Pantaleo A, Saldanha C, Baskurt OK
Tracing the Evolution of Angucyclinone Monooxygenases: Structural Determinants for C-12b Hydroxylation and Substrate Inhibition in PgaE
(2013)
Biochemistry
Kallio P, Patrikainen P, Belogurov GA, Mantsala P, Yang KQ, Niemi J, Metsa-Ketela M
Two ScFv antibody libraries derived from identical VLVH framework with different binding site designs display distinct binding profiles
(2013)
Protein Engineering, Design and Selection
Huovinen T, Syrjanpää M, Sanmark H, Brockmann EC, Azhayev A, Wang Q, Vehniäinen M, Lamminmäki U
A monomeric TIM-barrel structure from Pyrococcus furiosus is optimized for extreme temperatures
(2012)
Acta Crystallographica Section D: Biological Crystallography
Repo H, Oeemig JS, Djupsjobacka J, Iwai H, Heikinheimo P
Characterization of the Genome, Proteome, and Structure of Yersiniophage phi R1-37
(2012)
Journal of Virology
Skurnik M, Hyytiainen HJ, Happonen LJ, Kiljunen S, Datta N, Mattinen L, Williamson K, Kristo P, Szeliga M, Kalin-Manttari L, Ahola-Iivarinen E, Kalkkinen N, Butcher SJ
Communication Between the Calcium and cAMP Pathways Regulate the Expression of the TSH Receptor: TRPC2 in the Center of Action
(2012)
Molecular Endocrinology -Baltimore-
Lof C, Sukumaran P, Viitanen T, Vainio M, Kemppainen K, Pulli I, Nasman J, Kukkonen JP, Tornquist K
Effects of Antioxidants on Rapeseed Oil Oxidation in an Artificial Digestion Model Analyzed by UHPLC-​ESI-​MS
(2012)
Journal of Agricultural and Food Chemistry
Tarvainen Marko, Phuphusit Aleksandra, Suomela Jukka-Pekka, Kuksis Arnis, Kallio Heikki
Fast Genomic Biomarker Responses of Retene and Pyrene in Liver of Juvenile Rainbow Trout, Oncorhynchus mykiss
(2012)
Bulletin of Environmental Contamination and Toxicology
Rasanen K, Arsiola T, Oikari A
Flavour properties and chemistry of berries.
(2012)
Sandell M, Laaksonen O, Lunden S
Interleukin-1 beta is internalised by viable Aggregatibacter actinomycetemcomitans biofilm and locates to the outer edges of nucleoids
(2012)
Cytokine
Paino A, Lohermaa E, Sormunen R, Tuominen H, Korhonen J, Pöllänen MT, Ihalin R
Osmotic stress signaling via protein kinases
(2012)
Cellular and Molecular Life Sciences
Fujii H, Zhu JK
Systematic Structure-Activity Study on Potential Chaperone Lead Compounds for Acid alpha-Glucosidase
(2012)
ChemMedChem
Bruckmann C, Repo H, Kuokkanen E, Xhaard H, Heikinheimo P
The effect of enzymatic treatment on blackcurrant (Ribes nigrum) juice flavour and its stability
(2012)
Food Chemistry
Laaksonen O, Sandell M, Nordlund E, Heinio RL, Malinen HL, Jaakkola M, Kallio H
Flavonoids, sugars and fruit acids of alpine bearberry (Arctostaphylos alpina) from Finnish Lapland
(2011)
Food Research International
Linderborg K, Laaksonen O, Kallio H, Yang BR
Identification of the Lipopolysaccharide Core of Yersinia pestis and Yersinia pseudotuberculosis as the Receptor for Bacteriophage phi A1122
(2011)
Journal of Bacteriology
Kiljunen S, Datta N, Dentovskaya SV, Anisimov AP, Knirel YA, Bengoechea JA, Holst O, Skurnik M
LANTHANIDE CHELATE COMPLEMENTATION FOR HIGHLY SENSITIVE PROTEIN DETECTION
(2011)
Clinical Chemistry and Laboratory Medicine
Riuttamaki T, Kopra K, Blom S, Pakkila H, Takalo H, Soukka T
Molecular and cellular characterization of novel alpha-mannosidosis mutations
(2011)
Human Molecular Genetics
Kuokkanen E, Stensland HMFR, Smith W, Buvang EK, Nguyen L, Nilssen Ø, Heikinheimo P
Orosensory contributing compounds in crowberry (Empetrum nigrum) press-by products
(2011)
Food Chemistry
Laaksonen O, Sandell M, Jarvinen R, Kallio H
Overexpression of Man2C1 leads to protein underglycosylation and upregulation of endoplasmic reticulum-associated degradation pathway
(2011)
Glycobiology
Bernon C, Carre Y, Kuokkanen E, Slomianny MC, Mir AM, Krzewinski F, Cacan R, Heikinheimo P, Morelle W, Michalski JC, Foulquier F, Duvet S
Structure of Collagen Receptor Integrin alpha I-1 Domain Carrying the Activating Mutation E317A
(2011)
Journal of Biological Chemistry
Lahti M, Bligt E, Niskanen H, Parkash V, Brandt AM, Jokinen J, Patrikainen P, Kapyla J, Heino J, Salminen TA
The CBS Domain: A Protein Module with an Emerging Prominent Role in Regulation
(2011)
ACS Chemical Biology
Baykov AA, Tuominen HK, Lahti R
The Extra-Membranous Domains of the Competence Protein HofQ Show DNA Binding, Flexibility and a Shared Fold with Type I KH Domains
(2011)
Journal of Molecular Biology
Tarry M, Jääskeläinen M, Paino A, Tuominen H, Ihalin R, Högbom M
Trimeric Form of Intracellular ATP Synthase Subunit β of Aggregatibacter actinomycetemcomitans Binds Human Interleukin-1 β
(2011)
PLoS ONE
Paino A, Tuominen H, Jääskelainen M, Alanko J, Nuutila J, Asikainen SE, Pelliniemi LJ, Pöllänen MT, Chen C, Ihalin R
Ultra high performance liquid chromatography-mass spectrometric analysis of oxidized free fatty acids and acylglycerols
(2011)
European Journal of Lipid Science and Technology
Tarvainen M, Suomela JP, Kallio H
A new concept for ferredoxin-NADP(H) oxidoreductase binding to plant thylakoids
(2010)
Trends in Plant Science
Benz JP, Lintala M, Soll J, Mulo P, Bölter B
Chemical factors contributing to orosensory profiles of bilberry (Vaccinium myrtillus) fractions
(2010)
European Food Research and Technology
Laaksonen O, Sandell M, Kallio H
Development of an immunoassay for the detection of cystatin C dimers
(2010)
Journal of Immunological Methods
Hyytia H, Ristiniemi N, Airas L, Pettersson K, Hellman J
Drought stress-induced upregulation of components involved in ferredoxin-dependent cyclic electron transfer
(2010)
Journal of Plant Physiology
Lehtimaki N, Lintala M, Allahverdiyeva Y, Aro EM, Mulo P
Internalization of Coxsackievirus A9 Is Mediated by beta 2-Microglobulin, Dynamin, and Arf6 but Not by Caveolin-1 or Clathrin
(2010)
Journal of Virology
Heikkila O, Susi P, Tevaluoto T, Harma H, Marjomaki V, Hyypia T, Kiljunen S
Triterpene Acids in Plantago major: Identification, Quantification and Comparison of Different Extraction Methods
(2010)
Chromatographia
Tarvainen Marko, Suomela Jukka-Pekka, Kallio Heikki, Yang Baoru
Universal platform for quantitative analysis of DNA transposition
(2010)
Mobile DNA
Pajunen MI, Rasila TS, Happonen LJ, Lamberg A, Haapa-Paananen S, Kiljunen S, Savilahti H
Arabidopsis Tic62 and Ferredoxin-NADP(H) Oxidoreductase Form Light-Regulated Complexes That Are Integrated into the Chloroplast Redox Poise
(2009)
Plant Cell
Benz JP, Stengel A, Lintala M, Lee YH, Weber A, Philippar K, Gugel IL, Kaieda S, Ikegami T, Mulo P, Soll J, Bölter B
Lipidomic Analysis of Glycerolipid and Cholesteryl Ester Autooxidation Products
(2009)
Molecular Biotechnology
Kuksis A, Suomela JP, Tarvainen M, Kallio H
Orosensory Profiles and Chemical Composition of Black Currant (Ribes nigrum) Juice and Fractions of Press Residue
(2009)
Journal of Agricultural and Food Chemistry
Sandell M, Laaksonen O, Jarvinen R, Rostiala N, Pohjanheimo T, Tiitinen K, Kallio H
Removal of cell surface heparan sulfate increases TACE activity and cleavage of ErbB4 receptor
(2009)
BMC Cell Biology
Maatta JA, Olli K, Henttinen T, Tuittila MT, Elenius K, Salmivirta M
Effects of conformational activation of integrin alpha 1I and alpha 2I domains on selective recognition of laminin and collagen subtypes. – Integrin alpha I domain activation
(2008)
Experimental Cell Research
Tulla M, Lahti M, Puranen JS, Brandt A, Kapyla J, Domogatskaya A, Salminen TA, Tryggvason K, Johnson MS, Heino J
Effects of PEGylation to the stability and affinity of Ga-68-DOTA-peptides for VAP-1 targeting
(2008)
European Journal of Nuclear Medicine and Molecular Imaging
Autio A, Haukkala J, Henttinen T, Virsu P, Poyhonen T, Maksimow M, Salomaki S, Jalkanen S, Roivainen A
A CBS domain-containing pyrophosphatase of Moorella thermoacetica is regulated by adenine nucleotides
(2007)
Biochemical Journal
Jämsen J, Tuominen H, Salminen A, Belogurov GA, Magretova NN, Baykov AA, Lahti R
A complete structural description of the catalytic cycle of yeast pyrophosphatase
(2007)
Oksanen E, Ahonen AK, Tuominen H, Tuominen V, Lahti R, Goldman A, Heikinheimo P
Characterisation and subcellular localisation of human neutral class II alfa-mannosidase
(2007)
Glycobiology
Elina Kuokkanen, Wesley Smith, Marika Mäkinen, Heidi Tuominen, Maija Puhka, Eija Jokitalo, Ole-Kristian Tollersrud, Rene Cacan, Sandrine Duvet, Thomas Berg, Pirkko Heikinheimo
Kinetic and mutational analyses of the major cytosolic exopolyphosphatase from Saccharomyces cerevisiae – Characterization of Yeast Exopolyphosphatase
(2007)
Journal of Biological Chemistry
Tammenkoski M, Moiseev VM, Lahti M, Ugochukwu E, Brondijk THC, White SA, Lahti R, Baykov AA
Proteome analysis of cultivated vascular smooth muscle cells from a CADASIL patient.

(2007)
Molecular Medicine
Ihalainen S, Soliymani R, Iivanainen E, Mykkänen K, Sainio A, Pöyhönen M, Elenius K, Järveläinen H, Viitanen M, Kalimo H, Baumann M.

Small molecule designed to target metal binding site in the alpha 2I domain inhibits integrin function
(2007)
Journal of Medicinal Chemistry
Kapyla J, Pentikainen OT, Nyronen T, Nissinen L, Lassander S, Jokinen J, Lahti M, Marjamaki A, Johnson MS, Heino J,
Structural and functional characterization of ferredoxin-NADP(+)-oxidoreductase using knock-out mutants of Arabidopsis
(2007)
Plant Journal
Lintala M, Allahverdiyeva Y, Kidron H, Piippo M, Battchikova N, Suorsa M, Rintamaki E, Salminen TA, Aro EM, Mulo P
Two soluble pyrophosphatases in Vibrio cholerae: Transient redundancy or enduring cooperation?
(2006)
Биохимия / Biochemistry
Salminen A, Ilias M, Belogurov GA, Baykov AA, Lahti R, Young T
Vimentin function in lymphocyte adhesion and transcellular migration
(2006)
Nature Cell Biology
Nieminen M, Henttinen T, Merinen M, Marttila-Ichihara F, Eriksson JE, Jalkanen S
Molecular identification of PAL-E, a widely used endothelial-cell marker
(2005)
Blood
Niemela H, Elima K, Henttinen T, Irjala H, Salmi M, Jalkanen S
Cd2+-induced aggregation of Escherichia coli pyrophosphatase
(2004)
European Journal of Biochemistry
Zimenkov YV, Salminen A, Efimova IS, Lahti R, Baykov AA
CLEVER-1 mediates lymphocyte transmigration through vascular and lymphatic endothelium
(2004)
Blood
Salmi M, Koskinen K, Henttinen T, Elima K, Jalkanen S
IFN-alpha induced adenosine production on the endothelium: A mechanism mediated by CD73 (ecto-5 '-nucleotidase) up-regulation
(2004)
Journal of Immunology
Niemela J, Henttinen T, Yegutkin GG, Airas L, Kujari AM, Rajala P, Jalkanen S
Site-specific effects of zinc on the activity of family II pyrophosphatase
(2004)
Zyryanov AB, Tammenkoski M, Salminen A, Kolomiytseva GY, Fabrichniy IP, Goldman A, Lahti R, Baykov AA
Cellular distribution and contribution of cyclooxygenase (COX)-2 to diabetogenesis in NOD mouse
(2002)
Cell and Tissue Research
Luo C, Kallajoki M, Gross R, Mulari M, Teros T, Ylinen L, Makinen M, Laine J, Simell O
Functional and structural characterization of disease-causing mutations in alpha-mannosidosis.
(2002)
American Journal of Human Genetics
Stensland HMFR, Hansen GM, Heikinheimo P, Tollersrud OK, Nilssen Ø
Modulation of dimer stability in yeast pyrophosphatase by mutations at the subunit interface and ligand binding to the active site
(2002)
Journal of Biological Chemistry
Salminen A, Parfenyev AN, Salli K, Efimova IS, Magretova NN, Goldman A, Baykov AA, Lahti R
Aberrant expression of cyclooxygenase-2 in intestinal goblet cells of prediabetic NOD mice
(2001)
Diabetes
Simell O, Luo C, Laine JVO, Ylinen L, Teros T, Makinen M, Kalliokoski T, Ristimaki A, Sainio-Pollanen S, Erkkila S, Savolainen P, Simell T, Pollanen P
Biologian sanakirja
(2001)
Tirri R, Lehtonen J, Lemmetyinen R, Pihakaski S, Portin P
Crystal structure of Streptococcus mutans pyrophosphatase: A new fold for an old mechanism
(2001)
Structure
Merckel MC, Fabrichniy IP, Salminen A, Kalkkinen N, Baykov AA, Lahti R, Goldman A
Ligand binding sites in Escherichia coli inorganic pyrophosphatase: Effects of active site mutations
(2001)
Hyytia T, Halonen P, Salminen A, Goldman A, Lahti R, Cooperman BS
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