Integration of Matrisome Omics: Towards System Biology of the Tumor Matrisome
: Valerio Izzi, Jarkko Koivunen, Pekka Rappu, Jyrki Heino, Taina Pihlajaniemi
: Sylvie Ricard-Blum
: 2020
: Extracellular Matrix Omics
: Biology of Extracellular Matrix
: 7
: 131
: 156
: 978-3-030-58329-3
: 978-3-030-58330-9
: 0887-3224
DOI: https://doi.org/10.1007/978-3-030-58330-9_7
The tumor matrisome, the collection of structural and functional 
extracellular matrix (ECM) proteins found in tumors together with 
ECM-associated proteins, growth factors, cytokines and chemokines is an 
extremely dynamic entity whose composition and regulation depends on 
both local, cell-specific processes and overarching pan-cancer 
microenvironmental landscapes. A deeper knowledge and understanding of 
the tumor matrisome would grant us novel diagnostic, prognostic and 
therapeutic possibilities but to reach that point there is a pressing 
need to combine fine-grained molecular studies with system biology 
approaches to build a complete map of what actually happens in the tumor
 microenvironment. In this chapter, we will review the most salient 
findings on the tumor matrisome at the transcriptomics, regulomics and 
proteomics level and show how the use of big data enables the 
identification of biological features and characteristics that cross 
different tumors and the discovery of novel molecular mechanisms 
connecting the different omics level. Also, we will provide a simple 
walkthrough to jumpstart matrisome data analysis for complete beginners 
in a bid to ignite more research in this fascinating field.
