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Revealing secrets of the enigmatic omega subunit of bacterial RNA polymerase




TekijätJuha Kurkela, Julia Fredman, Tiina A Salminen, Taina Tyystjärvi

KustantajaJohn Wiley & Sons Ltd

Julkaisuvuosi2020

JournalMolecular Microbiology

Lehden akronyymiMol. Microbiol.

Vuosikerta115

Numero1

Sivujen määrä11

ISSN0950-382X

eISSN1365-2958

DOIhttps://doi.org/10.1111/mmi.14603


Tiivistelmä

The conserved omega (ω) subunit of RNA polymerase (RNAP) is the only nonessential subunit of bacterial RNAP core. The small ω subunit (7 kDa–11.5 kDa) contains three conserved α helices, and helices α2 and α3 contain five fully conserved amino acids of ω. Four conserved amino acids stabilize the correct folding of the ω subunit and one is located in the vicinity of the β′ subunit of RNAP. Otherwise ω shows high vari- ation between bacterial taxa, and although the main interaction partner of ω is always β′, many interactions are taxon-specific. ω-less strains show pleiotropic phenotypes, and based on in vivo and in vitro results, a few roles for the ω subunits have been described. Interactions of the ω subunit with the β′ subunit are important for the RNAP core assembly and integrity. In addition, the ω subunit plays a role in promoter selection, as ω-less RNAP cores recruit fewer primary σ factors and more alternative σ factors than intact RNAP cores in many species. Furthermore, the promoter selec- tion of an ω-less RNAP holoenzyme bearing the primary σ factor seems to differ from that of an intact RNAP holoenzyme.



Last updated on 2024-26-11 at 17:59