A1 Vertaisarvioitu data-artikkeli tieteellisessä lehdessä
BioTIME 2.0: Expanding and Improving a Database of Biodiversity Time Series
Tekijät: Dornelas, Maria; Antão, Laura H.; Bates, Amanda E.; Brambilla, Viviana; Chase, Jonathan M.; Chow, Cher F. Y.; Fontrodona-Eslava, Ada; Magurran, Anne E.; Martins, Inês S.; Moyes, Faye; Sagouis, Alban; Adu-Acheampong, Samuel; Acquah-Lamptey, Daniel; Adam, Dušan; Ajani, Penelope A.; Albaina, Aitor; Almaraz, Pablo; An, Jeongseop; Anderson, Roger Sigismund; Anderson, Madelaine Jean Robertson; Antunes, Alexsander Z.; Arismendi, Ivan; Armbrecht, Linda; Aros-Mardones, Pedro; Ashtamoorthy, Sreejith Kalpuzha; Ayyappan, Narayanan; Badihi, Gal; Bailey, Joseph J.; Baird, Andrew H.; Baird, Mark Edward; Balakrishnan, Sreekumar Vadakkethil; Barão-Nóbrega, José António L.; Barash, Adi; Barbosa, Miguel; Barlow, Jos; Bässler, Claus; Beaumont, Matthieu; Beenaerts, Natalie; Begot, Tiago Octavio; Beiroz, Wallace; Beldade, Ricardo; Bell, David M.; Bellgrove, Alecia; Belmaker, Jonathan; Benedetti-Cecchi, Lisandro; Benkwitt, Cassandra E.; Medina-van Berkum, Pamela; Bestelmeyer, Brandon T.; Betts, Matthew G.; Billah, Maxwell Kelvin; Bjorkman, Anne D.; Błażewicz, Magdalena; Bloch, Christopher P.; Blowes, Shane A.; Bode, Antonio; Bogoni, Juliano A.; Bolger, Thomas; Bonebrake, Timothy C.; Bonsdorff, Erik; Bottarin, Roberta; Brokensha, Luke N.; Brooker, Rob W.; Brooks, Andrew J.; Bruelheide, Helge; Bueno, Thiago Almeida; Laguionie, Claire; Campagnoli, Mariana Lopes; Cant, James; Caramaschi, Erica Pellegrini; Caron, Alexandre; Carroll, Tadhg; Caruso, Tancredi; Carvajal-Quintero, Juan; Castaldelli, Giuseppe; Castañeda-Moya, Edward; Castilho, Pedro V.; Cechin, Sonia Zanini; Chaikin, Shahar; Chandrashekara, Uchangi Manjunatha; Chase, Tory J.; Chen, Chaolun Allen; Cherem, Jorge José; Choi, Sei-Woong; Christensen, Erica M.; Christianini, Alexander V.; Chu, Jackson Wing Four; Coad, Peter; Van Colen, Carl; Comte, Lise; Cooper, Elisabeth J.; Cornelissen, J. Hans C.; Cosson, Eddy; Cotano, Unai; Crevecoeur, Luc; Crow, Shannan Kyle; Cumming, Graeme S.; Daga, Vanessa S.; Damasceno, Gabriella; Daskalova, Gergana N.; Davies, Claire H.; Davis, Robert A.; Day, Frank P.; De-La-Zerda, Sussy; Deacon, Amy Elizabeth; de Castro-Arrazola, Indradatta; Degraer, Steven; Deonarinesingh, Kharran; Diaz-Ricaurte, Juan C.; Dickman, Christopher R.; Dirilgen, Tara; Dolan, Ciaran John; Duffy, J. Emmett; Dunn, Timothy E.; Durigan, Giselda; Dwyer, Ciara; Earl, Stevan; Edelist, Dor; Edgar, Graham John; Edmondson, Sally; Elgin, Ashley K.; Ellingsen, Kari Elsa; Elmendorf, Sarah C.; Eriksen, Ruth S.; Ernest, S. K. Morgan; Escribano, Ruben; Eterovick, Paula Cabral; Evans, Brian S.; Everett, Jason D.; Evtimova, Vesela; Exton, Dan A.; Fairbairn, Andrew J.; Fantacini, Felipe Moreli; Farah, Fabiano Turini; Farneda, Fábio Zanella; Favila, Mario E.; Fernandez-Fournier, Philippe; Fernández-Zapata, Braulio; Ferreira, Diogo F.; Ferronato, Carola; du Feu, Christopher R.; Fidelis, Alessandra; Fifield, David A.; Filho, Vilmar Picinatto; Filho, Walter Mesquita; Fitt, Robert N. L.; Flechtmann, Carlos A. H.; Fraser, William R.; Fraser, Donna L.; Freixas, Lídia; Fryxell, John; Fundakowski, Garrett J.; Gabara, Scott Stanley; Gallois, Elise; García Criado, Mariana; García-Berthou, Emili; Garrabou, Joaquim; Gates, Andrew R.; Gatti, Roberto Cazzolla; Gavioli, Anna; Gavriel, Tal; Gendreau-Berthiaume, Benoit; Giam, Xingli; Gjerdrum, Carina; Glemnitz, Michael; Godbold, Jasmin Annica; Gómez-Gras, Daniel; Gonçalves, Rodrigo Barbosa; Goold, Andy; Gordon, Richard R.; Goren, Menachem; Goulart, Fernando Vilas Boas; Gould, William A.; Grabowski, Meagan M.; Graham, Nicholas A. J.; Graipel, Maurício Eduardo; Grange, Laura J.; Greenville, Aaron C.; Grossman, Gary D.; Guinder, Valeria A.; Haase, Peter; Haskins, Gary N.; Havstad, Kris; Hermanutz, Luise; Hickford, Michael Julian Hames; Hidalgo, Pamela; Higuchi, Pedro; Hoey, Andrew S.; Van Hoey, Gert; Hofgaard, Annika; Holeck, Kristen T.; Hollister, Robert D.; Holmes, Richard T.; Hoogenboom, Mia Odell; Hortal, Joaquín; Horton, Tammy; Hsieh, Chih-hao; Huffard, Christine L.; Huikkonen, Ida-Maria; Hurlbert, Allen H.; Hynes, Julian; Irz, Pascal; Ivanauskas, Natalia Macedo; Iwayama, Akemi; James, Darren K.; Jandt, Ute; Jażdżewska, Anna M.; Jocque, Merlijn; Johnston, Sophie T.; Jones, Samuel E. I.; Jones, Faith A. M.; Jones, Julia A.; Jucevica, Edite; Kagainis, Ugis; Kagami, Maiko; Kang, Jungwon; Ke, Xuejia; Keeley, Erin Colleen; Kinnear, Rebecca; Klanderud, Kari; Klinck, Uwe; van Klink, Roel; Klotz, Stefan; Knockaert, Carolien; Knutsen, Halvor; Koivula, Matti; Kortz, Alessandra; Kriegel, Peter; Kuo, Chao-Yang; Kushner, David J.; Kyerematen, Rosina; Lagarde, Raphaël; Lancaster, Lesley T.; Landau, Ori Frid; Van Landuyt, Wouter; Larson, Eric R.; Lazarus, Mai; Lee, Cheol Min; Lefcheck, Jonathan S.; Lembrechts, Jonas J.; Ferreira de Lima, Renato A.; Lima, Romullo Guimarães; Lima, Nathália G. S.; Linares, Cristina; Lindstrom, Sandra C.; Lloret, Francisco; Lloyd, John David; Lobato, Cleonice Maria Cardoso; Lodge, David M.; Long, Peter Richard; López-Abbate, Celeste; López-Baucells, Adrià; Louzada, Julio; Louzao, Maite; Lugliè, Antonella; Luiz, Micheli Ribeiro; Macdonald, S. Ellen; Madin, Joshua S.; Magalhães, André Lincoln Barroso; Mahabir, Rajindra; Maphisa, David; Martin, Thomas Edward; Martins, Marcio; Martone, Patrick T.; Matesanz, Silvia; Matsuzaki, Shin-ichiro S.; Matthews, Thomas J.; Matthews, Iain McCombe; Maxwell, Connie J.; McFarland, Kent P.; McGill, Brian J.; McKnight, Diane Marie; McWilliam, Michael J.; Meador, Jason; Meesenburg, Henning; Meier, Kristin; Melecis, Viesturs; Meserve, Peter L.; Meyer, Christoph F. J.; Michelsen, Anders; Miiller, Natali Oliva Roman; Milardi, Marco; Milchakova, Nataliya; Miller, Robert J.; Millett, Jonathan; Moens, Tom; Montag, Luciano F. A.; Moore, Jon; Müller, Jörg; Murali, Akhil; Murray, Shauna Ann; Myers-Smith, Isla H.; Myster, Randall W.; Nakamura, Masahiro; Nayar, Sasi; Neat, Francis; Nelson, James A.; Nelson, Michael Paul; Nikolov, Boris P.; Nouioua, Rym; Nsor, Collins Ayine; O'Connor, Michael; Obodai, Edward Adzesiwor; Offland, Amy Marie; Ogaya, Romà; Ogura, Hisako; Okey, Thomas A.; Olden, Julian D.; Oliveira-Santos, Luiz Gustavo Rodrigues; Oliver, Jeffrey C.; Olsen, Esben Moland; Onipchenko, Vladimir G.; Oro, Daniel; Ozolins, Davis; Pabis, Krzysztof; Padedda, Bachisio Mario; Palacio, Facundo X.; Paquette, Alain; Pardede, Sinta Trilestari; Paterson, David M.; Pausina, Sarah; Pélissier, Raphaël; Pennings, Steven C.; Penuelas, Josep; Pereira, Felipe Walter; Peroni, Nivaldo; Picó, Sergio; Pilotto, Francesca; Pinheiro, Hudson Tercio; Pizarro, Oscar; Pizzolotto, Roberto; Pomati, Francesco; Pompeu, Paulo Santos; Ponton, Dominique; Post, Eric; Poulet, Nicolas; Pöyry, Juha; Presley, Steven J.; Prins, Herbert H. T.; Provoost, Pieter; Prudic, Kathleen L.; Punjayil, Vignesh; Pyšek, Petr; Querner, Pascal; Quimbayo, Juan Pablo; Ramnarine, Indar W.; Reed, Daniel C.; Reich, Peter Bernard; Remillard, Suzanne M.; Richards, Cerren; Richardson, Anthony James; van Rijn, Itai; Rivera-Monroy, Victor H.; Rixen, Christian; Robinson, Kevin Peter; Rocha, Ricardo; Rodrigues, Ricardo R.; Rodrigues, Cassy; Roos, Bjørn de; Rossa-Feres, Denise de C. de; Rosselli, Loreta; Rothlisberg, Peter Charles; Rubio, Ana; Rudstam, Lars G.; Ruz, Catalina S.; Rybicki, Nancy B.; Ryckegem, Gunther Van; Rypel, Andrew L.; Sadler, Jon P.; Saito, Victor Satoru; Sal, Sofia; Salomão, Renato Portela; Sanders, Nathan J.; Santos, Flavio A. M.; Santos, Tiago Gomes dos; Sarker, Swapan Kumar; Scanga, Sara E.; Schaub, Marcus; Schmidt, Jochen; Schmidt, Inger Kappel; Schooley, Robert L.; Schultz, Alfred; Scotti, Alberto; Serpell-Stevens, Amanda; Serrano, Filipe C.; Shadwick, Elizabeth H.; Shaft, Matthew; Sherry, Thomas W.; Shimabukuro, Erika Mayumi; Siciński, Jacek; Sievers, Caya; Silva, Fernando Rodrigues da; Silva, Ana Carolina da; Silveira, Juliana M.; Siqueira, Tadeu; Sivadasan, Arunkumar Kavidapadinjattathil; Sivan, Prasad Theruvil Parambil; Skuja, Agnija; Slaughter, Amalia L.; Slingsby, Jasper A.; Smith, Joseph R.; Soares, Bruno Eleres; Solan, Martin; Souza, Flaviana Maluf; Souza, Gabriel B. G.; Sprague, Joshua L.; Stachow, Ulrich; Stadt, J. John; Stallings, Christopher D.; Stanchev, Radoslav Hristov; Stanley, Emily H.; Starzomski, Brian M.; Sterza, Jose Mauro; Stevens, Maarten; Stiles, F. Gary; Stoll, Stefan; Stuart-Smith, Rick D.; Súarez, Yzel Rondon; Super, Laura; Supp, Sarah R.; Sutela, Tapio; Suthers, Iain M.; Suuronen, Anna; Swadling, Kerrie M.; Szydlowski, Daniel K.; Taki, Hisatomo; Taylor, Sara Jeanne Snell; Tedesco, Pablo A.; Teichert, Nils; Terui, Akira; Thiede, Gary P.; Thimonier, Anne; Thomas, Oliver; Thompson, Peter Allan; Thorn, Simon; Tiemann, Jeremy S.; Toledo, Luís Felipe; Tolvanen, Anne; Toniato, Maria Teresa Zugliani; Torre, Ignasi; Tortato, Marcos Adriano; Totsu, Kumiko; Trant, Andrew; Twilley, Robert R.; Urabe, Hirokazu; Valade, Pierre; Valdivia, Nelson; Vallejo, Martha Isabel; Valone, Thomas J.; Vanaverbeke, Jan; Vasconcelos, Tiago Silveira; Vehanen, Teppo; Venturoli, Fábio; Verheye, Hans M.; Vermeulen, Hendrik Jannes Wietse; Verstraeten, Arne; Vianna, Marcelo; Vieira, Rui; Vieira-Alencar, João Paulo Santos; Vilella, Marc; Vitule, Jean Ricardo Simões; Vu, Lien Van; Waide, Robert B.; Warren, Paige S.; Wayman, Joseph Paul; Webb, Sara L.; Weigel, Benjamin; Welti, Ellen A. R.; West, Fritha; Westermann, Fulgor; Whalen, Matthew A.; White, Ethan P.; Widdicombe, Claire E.; Williams, Richard; Williamson, Mark; Willig, Michael R.; Wipf, Sonja; Woehler, Eric J.; Woldering, Alje; Woods, Kerry D.; Xu, Wu-Bing; Yahel, Ruthy; Yang, Zeren; Zawada, Kyle J. A.; Zornosa-Torres, Camila; Zvuloni, Assaf
Kustantaja: Wiley
Julkaisuvuosi: 2025
Journal: Global Ecology and Biogeography
Tietokannassa oleva lehden nimi: Global Ecology and Biogeography
Artikkelin numero: e70003
Vuosikerta: 34
Numero: 5
ISSN: 1466-822X
eISSN: 1466-8238
DOI: https://doi.org/10.1111/geb.70003
Verkko-osoite: https://doi.org/10.1111/geb.70003
Rinnakkaistallenteen osoite: https://research.utu.fi/converis/portal/detail/Publication/491933242
Motivation
Here, we make available a second version of the BioTIME database, which compiles records of abundance estimates for species in sample events of ecological assemblages through time. The updated version expands version 1.0 of the database by doubling the number of studies and includes substantial additional curation to the taxonomic accuracy of the records, as well as the metadata. Moreover, we now provide an R package (BioTIMEr) to facilitate use of the database.
Main Types of Variables Included
The database is composed of one main data table containing the abundance records and 11 metadata tables. The data are organised in a hierarchy of scales where 11,989,233 records are nested in 1,603,067 sample events, from 553,253 sampling locations, which are nested in 708 studies. A study is defined as a sampling methodology applied to an assemblage for a minimum of 2 years.
Spatial Location and Grain
Sampling locations in BioTIME are distributed across the planet, including marine, terrestrial and freshwater realms. Spatial grain size and extent vary across studies depending on sampling methodology. We recommend gridding of sampling locations into areas of consistent size.
Time Period and Grain
The earliest time series in BioTIME start in 1874, and the most recent records are from 2023. Temporal grain and duration vary across studies. We recommend doing sample-level rarefaction to ensure consistent sampling effort through time before calculating any diversity metric.
Major Taxa and Level of Measurement
The database includes any eukaryotic taxa, with a combined total of 56,400 taxa.
Software Format
csv and. SQL.
Ladattava julkaisu This is an electronic reprint of the original article. |