A1 Vertaisarvioitu data-artikkeli tieteellisessä lehdessä
Global Spore Sampling Project : A global, standardized dataset of airborne fungal DNA
Tekijät: Ovaskainen, Otso; Abrego, Nerea; Furneaux, Brendan; Hardwick, Bess; Somervuo, Panu; Palorinne, Isabella; Andrew, Nigel R.; Babiy, Ulyana V.; Bao, Tan; Bazzano, Gisela; Bondarchuk, Svetlana N.; Bonebrake, Timothy C.; Brennan, Georgina L.; Bret-Harte, Syndonia; Bässler, Claus; Cagnolo, Luciano; Cameron, Erin K.; Chapurlat, Elodie; Creer, Simon; D’Acqui, Luigi P.; de Vere, Natasha; Desprez-Loustau, Marie-Laure; Dongmo, Michel A. K.; Dyrholm Jacobsen, Ida B.; Fisher, Brian L.; Flores de Jesus, Miguel; Gilbert, Gregory S.; Griffith, Gareth W.; Gritsuk, Anna A.; Gross, Andrin; Grudd, Håkan; Halme, Panu; Hanna, Rachid; Hansen, Jannik; Hansen, Lars Holst; Hegbe, Apollon D. M. T.; Hill, Sarah; Hogg, Ian D.; Hultman, Jenni; Hyde, Kevin D.; Hynson, Nicole A.; Ivanova, Natalia; Karisto, Petteri; Kerdraon, Deirdre; Knorre, Anastasia; Krisai-Greilhuber, Irmgard; Kurhinen, Juri; Kuzmina, Masha; Lecomte, Nicolas; Lecomte, Erin; Loaiza, Viviana; Lundin, Erik; Meire, Alexander; Mešić, Armin; Miettinen, Otto; Monkhause, Norman; Mortimer, Peter; Müller, Jörg; Nilsson, R. Henrik; Nonti, Puani Yannick C.; Nordén, Jenni; Nordén, Björn; Paz, Claudia; Pellikka, Petri; Pereira, Danilo; Petch, Geoff; Pitkänen, Juha-Matti; Popa, Flavius; Potter, Caitlin; Purhonen, Jenna; Pätsi, Sanna; Rafiq, Abdullah; Raharinjanahary, Dimby; Rakos, Niklas; Rathnayaka, Achala R.; Raundrup, Katrine; Rebriev, Yury A.; Rikkinen, Jouko; Rogers, Hanna M. K.; Rogovsky, Andrey; Rozhkov, Yuri; Runnel, Kadri; Saarto, Annika; Savchenko, Anton; Schlegel, Markus; Schmidt, Niels Martin; Seibold, Sebastian; Skjøth, Carsten; Stengel, Elisa; Sutyrina, Svetlana V.; Syvänperä, Ilkka; Tedersoo, Leho; Timm, Jebidiah; Tipton, Laura; Toju, Hirokazu; Uscka-Perzanowska, Maria; van der Bank, Michelle; Herman van der Bank, F.; Vandenbrink, Bryan; Ventura, Stefano; Vignisson, Solvi R.; Wang, Xiaoyang; Weisser, Wolfgang W.; Wijesinghe, Subodini N.; Joseph Wright, S.; Yang, Chunyan; Yorou, Nourou S.; Young, Amanda; Yu, Douglas W.; Zakharov, Evgeny V.; Hebert, Paul D. N.; Roslin, Tomas
Kustantaja: Springer Nature
Julkaisuvuosi: 2024
Journal: Scientific Data
Tietokannassa oleva lehden nimi: Scientific data
Lehden akronyymi: Sci Data
Artikkelin numero: 561
Vuosikerta: 11
Numero: 1
eISSN: 2052-4463
DOI: https://doi.org/10.1038/s41597-024-03410-0
Verkko-osoite: https://www.nature.com/articles/s41597-024-03410-0
Rinnakkaistallenteen osoite: https://research.utu.fi/converis/portal/detail/Publication/454746974
Novel methods for sampling and characterizing biodiversity hold great promise for re-evaluating patterns of life across the planet. The sampling of airborne spores with a cyclone sampler, and the sequencing of their DNA, have been suggested as an efficient and well-calibrated tool for surveying fungal diversity across various environments. Here we present data originating from the Global Spore Sampling Project, comprising 2,768 samples collected during two years at 47 outdoor locations across the world. Each sample represents fungal DNA extracted from 24 m3 of air. We applied a conservative bioinformatics pipeline that filtered out sequences that did not show strong evidence of representing a fungal species. The pipeline yielded 27,954 species-level operational taxonomic units (OTUs). Each OTU is accompanied by a probabilistic taxonomic classification, validated through comparison with expert evaluations. To examine the potential of the data for ecological analyses, we partitioned the variation in species distributions into spatial and seasonal components, showing a strong effect of the annual mean temperature on community composition.
Ladattava julkaisu This is an electronic reprint of the original article. |  |
Julkaisussa olevat rahoitustiedot:
Academy of Finland (336212, 345110, 322266, 335354), the ERC under the European Union’s Horizon 2020 research and innovation programme (856506; ERC-synergy project LIFEPLAN), EU Horizon 2020 project INTERACT, 730938 and 871120, Jane and Aatos Erkko Foundation, Research Council of Norway through its Centres of Excellence Funding Scheme (223257), Estonian Research Council (PRG1170, PRG632), FORMAS (215-2011-498, 226-2014-1109), Polar Knowledge Canada, Natural Sciences and Engineering Research Council of Canada (NSERC Discovery grant to NL), Bruce McDonald, Natural Environment Research Council (NERC) U.K. (NE/N001710/1, NE/N002431/1), BBSRC (BB/L012286/1), Novo Nordisk Foundation (Project ID NNF22OC0071701), Austrian ministry of Science (the ABOL-HRSM project), municipality of Vienna (division Environmental protection), the Southern Scientific Centre RAS (122020100332-8), the Croatian Science Foundation under the project FunMed (HRZZ-IP-2022-10-5219), the US National Science Foundation (DEB-1655896, DEB-1655076,
