B1 Non-refereed article in a scientific journal
MSiMass List: A Public Database of Identifications for Protein MALDI MS Imaging
Authors: Liam A. McDonnell, Axel Walch, Markus Stoeckli, Garry L. Corthals
Publisher: AMER CHEMICAL SOC
Publishing place: WASHINGTON; 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
Publication year: 2014
Journal: Journal of Proteome Research
Journal name in source: Journal of Proteome Research
Journal acronym: J.Proteome Res.
Volume: 13
Issue: 2
First page : 1138
Last page: 1142
Number of pages: 5
ISSN: 1535-3893
eISSN: 1535-3907
DOI: https://doi.org/10.1021/pr400620y
The clinical application of mass spectrometry imaging has developed into a sizable subdiscipline of proteomics and metabolomics because its seamless integration with pathology enables biomarkers and biomarker profiles to be determined that can aid patient and disease stratification (diagnosis, prognosis, and response to therapy). Confident identification of the discriminating peaks remains a challenge owing to the presence of nontryptic protein fragments, large mass-to-charge ratio ions that are not efficiently fragmented via tandem mass spectrometry or a high density of isobaric species. A public database of identifications has been initiated to aid the clinical development and implementation of mass spectrometry imaging. The MSiMass list database (www.maldi-msi.org/mass) enables users to assign identities to the peaks observed in their experiments and provides the method's by which the identifications were obtained. In contrast with existing protein databases, this list is designed as a community effort without a formal review panel. In this concept, authors can freely enter data and can comment on existing entries. In such, the database itself is an experiment on sharing knowledge, and its ability to rapidly provide quality data will be evaluated in the future.