B1 Non-refereed article in a scientific journal

MSiMass List: A Public Database of Identifications for Protein MALDI MS Imaging




AuthorsLiam A. McDonnell, Axel Walch, Markus Stoeckli, Garry L. Corthals

PublisherAMER CHEMICAL SOC

Publishing placeWASHINGTON; 1155 16TH ST, NW, WASHINGTON, DC 20036 USA

Publication year2014

Journal: Journal of Proteome Research

Journal name in sourceJournal of Proteome Research

Journal acronymJ.Proteome Res.

Volume13

Issue2

First page 1138

Last page1142

Number of pages5

ISSN1535-3893

eISSN1535-3907

DOIhttps://doi.org/10.1021/pr400620y


Abstract

The clinical application of mass spectrometry imaging has developed into a sizable subdiscipline of proteomics and metabolomics because its seamless integration with pathology enables biomarkers and biomarker profiles to be determined that can aid patient and disease stratification (diagnosis, prognosis, and response to therapy). Confident identification of the discriminating peaks remains a challenge owing to the presence of nontryptic protein fragments, large mass-to-charge ratio ions that are not efficiently fragmented via tandem mass spectrometry or a high density of isobaric species. A public database of identifications has been initiated to aid the clinical development and implementation of mass spectrometry imaging. The MSiMass list database (www.maldi-msi.org/mass) enables users to assign identities to the peaks observed in their experiments and provides the method's by which the identifications were obtained. In contrast with existing protein databases, this list is designed as a community effort without a formal review panel. In this concept, authors can freely enter data and can comment on existing entries. In such, the database itself is an experiment on sharing knowledge, and its ability to rapidly provide quality data will be evaluated in the future.




Last updated on 26/11/2024 09:07:56 PM