A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä
Troubles with mycorrhizal mushroom identification where morphological differentiation lags behind barcode sequence divergence
Tekijät: Bazzicalupo AL, Buyck B, Saar I, Vauras J, Carmean D, Berbee ML
Kustantaja: International Bureau for Plant Taxonomy and Nomenclature
Kustannuspaikka: Bratislava
Julkaisuvuosi: 2017
Journal: Taxon
Tietokannassa oleva lehden nimi: TAXON
Lehden akronyymi: TAXON
Vuosikerta: 66
Numero: 4
Aloitussivu: 791
Lopetussivu: 810
Sivujen määrä: 20
ISSN: 0040-0262
eISSN: 1996-8175
DOI: https://doi.org/10.12705/664.1
Tiivistelmä
Species of Russula (Russulaceae), a large, cosmopolitan, ectomycorrhizal fungal genus are notoriously difficult to identify. To delimit species and to evaluate their morphology, we sequenced the similar to 400 bp ITS2 ribosomal DNA region from 713 Pacific Northwest Russula specimens from Benjamin Woo's exceptional collection. As a topological constraint for analysis of the ITS2, we sequenced and inferred a phylogeny from the ITS, LSU, RPB2 and EF1-alpha regions from 50 European and North American specimens of major clades in Russula. We delimited 72 candidate species from Woo's collection's ITS2 sequences using ABGD, GMYC, PTP, and mothur software. To guide application of names, we sequenced a similar to 200 bp portion of the ITS from 18 American type specimens. Of the 72 delimited species, 28 matched a type or a currently barcoded European species. Among the remaining 44 are poorly known or undescribed species. We tested the congruence of morphology with delimitations for 23 species represented by 10 or more specimens each. No morphological character alone was consistently diagnostic across all specimens of any of the 23 candidate species. Ordination of combined field characters followed by pairwise multivariate analysis of variance showed that centroids were significantly different in 221 of 253 species pair comparisons. Ordination also showed that specimens from the same species were widely dispersed, overlapping with specimens from other species. This explains why only 48.5% of specimens were correctly assigned to their species in a canonical variates analysis of combined field and spore characters. Based on sequence comparisons, we contribute to correcting the broad and confusing misapplications of European names that have long obscured patterns of Russula's geographical distribution and diversification. Our evidence suggests that morphology in Russula diverges slowly, and that phenotypic plasticity, convergence, or retention of ancestral polymorphisms blur the distinctions among recently derived species.
Species of Russula (Russulaceae), a large, cosmopolitan, ectomycorrhizal fungal genus are notoriously difficult to identify. To delimit species and to evaluate their morphology, we sequenced the similar to 400 bp ITS2 ribosomal DNA region from 713 Pacific Northwest Russula specimens from Benjamin Woo's exceptional collection. As a topological constraint for analysis of the ITS2, we sequenced and inferred a phylogeny from the ITS, LSU, RPB2 and EF1-alpha regions from 50 European and North American specimens of major clades in Russula. We delimited 72 candidate species from Woo's collection's ITS2 sequences using ABGD, GMYC, PTP, and mothur software. To guide application of names, we sequenced a similar to 200 bp portion of the ITS from 18 American type specimens. Of the 72 delimited species, 28 matched a type or a currently barcoded European species. Among the remaining 44 are poorly known or undescribed species. We tested the congruence of morphology with delimitations for 23 species represented by 10 or more specimens each. No morphological character alone was consistently diagnostic across all specimens of any of the 23 candidate species. Ordination of combined field characters followed by pairwise multivariate analysis of variance showed that centroids were significantly different in 221 of 253 species pair comparisons. Ordination also showed that specimens from the same species were widely dispersed, overlapping with specimens from other species. This explains why only 48.5% of specimens were correctly assigned to their species in a canonical variates analysis of combined field and spore characters. Based on sequence comparisons, we contribute to correcting the broad and confusing misapplications of European names that have long obscured patterns of Russula's geographical distribution and diversification. Our evidence suggests that morphology in Russula diverges slowly, and that phenotypic plasticity, convergence, or retention of ancestral polymorphisms blur the distinctions among recently derived species.
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