G5 Article dissertation
Molecular biology, genetics and applications of yersiniophages
Authors: Kiljunen Saija
Publisher: Annales Univeritatis Turkuensis
Publishing place: Turku
Publication year: 2006
ISBN: 951-29-3125-7
The genus Yersinia in the family Enterobacteriaceae consists of 12 species, of which three are human pathogens. Yersinia enterocolitica and Yersinia pseudotuberculosis cause primarily gastrointestinal infections, whereas Yersinia pestis is the causative agent of plague.
Bacteriophages (phages) are viruses that infect bacteria. They are the most abundant and versatile group of organisms on Earth and have a significant impact on microbial ecosystems. Several phages that can infect Yersinia are known, but only a few have been characterized in detail. The aim of this thesis was to obtain more information about yersiniophages, with a special interest in understanding the factors that determine their host specificity.
The phages studied in this thesis were phiYeO3-12 and phiR1-37, which infect Y. enterocolitica serotype O:3 (YeO3), and Y. pestis phage phiA1122. phiYeO3-12 and phiA1122 are T7 – related members of Podoviridae, whereas phiR1-37 belongs to the viral family Myoviridae.
These phages utilize different parts of Yersinia lipopolysaccharides as their receptor. For phiYeO3-12 the receptor is the YeO3 O-antigen. In this work, the YeO3 outer core was identified as the receptor for phiR1-37 and the core of Y. pestis and Y. pseudotuberculosis as the receptor for phiA1122.
The basic biological and genetic features of phages phiYeO3-12 and phiR1-37 were elucidated in this work. phiR1-37 was found to be exceptional for having its genome composed of DNA where thymidine is replaced by deoxyuridine. According to the N-terminal amino acid sequences of its structural proteins and a partial genomic sequence, no close relatives of phiR1-37 have been described. For phiYeO3-12, the non-essential regions in the genome were identified and the genes coding for DNA ligase and lysozyme were shown to be evolutionary factors important in the adaptation of phiYeO3-12 to grow on Yersinia.