A1 Refereed original research article in a scientific journal

Gas-phase study on uridine: Conformation and X-ray photofragmentation




AuthorsItala E, Kooser K, Rachlew E, Levola H, Ha DT, Kukk E

PublisherAmer Inst Physics

Publication year2015

JournalJournal of Chemical Physics

Journal name in sourceJOURNAL OF CHEMICAL PHYSICS

Journal acronymJ Chem Phys

Article numberARTN 194303

Volume142

Issue19

Number of pages8

ISSN0021-9606

DOIhttps://doi.org/10.1063/1.4919878


Abstract

Fragmentation of RNA nucleoside uridine, induced by carbon 1s core ionization, has been studied. The measurements by combined electron and ion spectroscopy have been performed in gas phase utilizing synchrotron radiation. As uridine is a combination of d-ribose and uracil, which have been studied earlier with the same method, this study also considers the effect of chemical environment and the relevant functional groups. Furthermore, since in core ionization the initial core hole is always highly localized, charge migration prior to fragmentation has been studied here. This study also demonstrates the destructive nature of core ionization as in most cases the C 1s ionization of uridine leads to concerted explosions producing only small fragments with masses <= 43 amu. In addition to fragmentation patterns, we found out that upon evaporation the sugar part of the uridine molecule attains hexagonal form. (C) 2015 AIP Publishing LLC.




Last updated on 2024-26-11 at 13:40