A1 Refereed original research article in a scientific journal

2 '-O-[(4-CF3-triazol-1-yl)methyl] Uridine - A Sensitive F-19 NMR Sensor for the Detection of RNA Secondary Structures




AuthorsGranqvist L, Virta P

PublisherAMER CHEMICAL SOC

Publication year2015

Journal:Journal of Organic Chemistry

Journal name in sourceJOURNAL OF ORGANIC CHEMISTRY

Journal acronymJ ORG CHEM

Volume80

Issue16

First page 7961

Last page7970

Number of pages10

ISSN0022-3263

eISSN1520-6904

DOIhttps://doi.org/10.1021/acs.joc.5b00973


Abstract

A sensitive uridine-derived sensor (viz., 2'-O-[(4-CF3-triazol-1-yOmethyl]uridine, 1) for F-19 NMR spectroscopic monitoring of RNA secondary structures is described. The applicability of 1 is demonstrated by monitoring the thermal denaturation of the following double and triple helical RNA models: (1) a miR 215 hairpin, (2) a poly U-A*U triple helix RNA (bearing two C-G*CH+ interrupts), and (3) a polyadenylated nuclear-nuclear retention element complex. In these RNA models, the F-19 NMR shift of the 2'-O-(CF3-triazolylmethyl) group shows high sensitivity to secondary structural arrangements. Moreover, 1 favors the desired N-conformation, and its effect on both RNA duplex and triplex stabilities is marginal.




Last updated on 2024-26-11 at 20:20