A1 Refereed original research article in a scientific journal

2 '-O-[(4-CF3-triazol-1-yl)methyl] Uridine - A Sensitive F-19 NMR Sensor for the Detection of RNA Secondary Structures




AuthorsGranqvist L, Virta P

PublisherAMER CHEMICAL SOC

Publication year2015

JournalJournal of Organic Chemistry

Journal name in sourceJOURNAL OF ORGANIC CHEMISTRY

Journal acronymJ ORG CHEM

Volume80

Issue16

First page 7961

Last page7970

Number of pages10

ISSN0022-3263

eISSN1520-6904

DOIhttps://doi.org/10.1021/acs.joc.5b00973


Abstract

A sensitive uridine-derived sensor (viz., 2'-O-[(4-CF3-triazol-1-yOmethyl]uridine, 1) for F-19 NMR spectroscopic monitoring of RNA secondary structures is described. The applicability of 1 is demonstrated by monitoring the thermal denaturation of the following double and triple helical RNA models: (1) a miR 215 hairpin, (2) a poly U-A*U triple helix RNA (bearing two C-G*CH+ interrupts), and (3) a polyadenylated nuclear-nuclear retention element complex. In these RNA models, the F-19 NMR shift of the 2'-O-(CF3-triazolylmethyl) group shows high sensitivity to secondary structural arrangements. Moreover, 1 favors the desired N-conformation, and its effect on both RNA duplex and triplex stabilities is marginal.




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