A3 Refereed book chapter or chapter in a compilation book
Quantification of Ikaros Splice Variants by Real-Time PCR
Authors: Elli Veistinen, Kalle-Pekka Nera, Jukka Alinikula, Olli Lassila
Editors: Carl Wittwer, Meinhard Hahn, Karen Kaul
Publication year: 2004
Book title : Rapid Cycle Real-Time PCR — Methods and Applications
First page : 73
Last page: 82
Number of pages: 10
DOI: https://doi.org/10.1007/978-3-642-18840-4_8
The Ikaros family is an important group of transcription factors essential in the normal development of hematopoietic lineages [1, 2, 3]. They function as transcriptional regulators through chromatin remodeling [4] and are active only as dimers [1]. Ikaros family members — Ikaros, Aiolos, and Helios — are DNA-binding, zinc-finger proteins. They all generate a large pattern of splice variants [1,5, 6,7,8]. Cloned Ikaros isoforms are shown in Figure 1. Some of the splice variants lack one or more of the four N-terminal zinc fingers and their DNA binding affinity is altered or totally lost. Isoforms that lack the DNA-binding capacity are thought to have a dominant negative function because they prevent the binding of the dimer to DNA. Ikaros family proteins function as part of a multicomponent chromatin remodeling complex [9]. Splice variants missing one or more exons might selectively lack sites for protein-protein interactions or regulation of the complex, and therefore, have altered function.