Juho Heimonen
PhD
juaheim@utu.fi Vesilinnantie 5 Turku Office: 450L No office hours. Please contact me via email to make an appointment. IKITIK, Information and language technology for health information and communication |
text mining; machine learning; knowledge representation; bioNLP; bioinformatics
Juho Heimonen received his PhD degree in Bioinformatics from the University of Turku in 2019 and is currently working as a university teacher at the Department of Computing. His main research interest is the use of text mining and machine learning to solve domain-specific problems. Heimonen has studied university pedagogy and has acquired over 10 years of teaching experience. He has also worked in several research projects in connection to the themes of his PhD dissertation (Knowledge Representation and Text Mining in Biomedical, Healthcare, and Political Domains).
Heimonen's current research interests include the use of text mining, machine learning and knowledge representation in various domains. He is particularly interested in how text mining and knowledge representations can be used to improve healthcare services and how machine learning methods can be adapted to domain-specific problems.
Heimonen is a member of the IKITIK research consortium.
Heimonen is interested in teaching data analytics, programming and bioinformatics to both major and minor subject students. He is excited about MOOCs and other possibilities to organise teaching online in a time and location independent manner.
Heimonen is currently responsible for Bioinformatics Programming Course (5 ECTS) and Introduction to Statistical Analysis (5 ECTS) at the Department of Computing. He also lectures in Applications of Data Analysis (5 ECTS) and Digitalisaatio sosiaali- ja terveydenhuollon palveluissa (3 ECTS), supervises bachelor's thesis students and organises thesis seminars. His previous teaching responsibilities include Supplementary mathematics (5 ECTS), Introduction to Statistics (4 ECTS), Bioinformatiikan perusteet (5 ECTS), and Mathematics for Bioinformatics (4 ECTS). He has also been a guest lecturer in courses at other departments.
- Exploring the Documentation of Delirium in Patients After Cardiac Surgery: A Retrospective Patient Record Study (2024)
- Computers, Informatics, Nursing
(Refereed journal article or data article (A1)) - Propagating AI Knowledge Across University Disciplines- The Design of A Multidisciplinary AI Study Module (2020)
- Conference proceedings : Frontiers in Education Conference
(Refereed article in conference proceedings (A4)) - Knowledge representation and text mining in biomedical, healthcare, and political domains (2019) Heimonen Juho
(Doctoral dissertation (article) (G5)) - Pain process of patients with cardiac surgery — Semantic annotation of electronic patient record data (2019)
- Journal of Clinical Nursing
(Refereed journal article or data article (A1)) - Ontology Development for Patient Education Documents Using a Professional- and Patient-Oriented Delphi Method (2018)
- Computers, Informatics, Nursing
(Refereed journal article or data article (A1)) - Automated quantification of Reuters news using a receiver operating characteristic curve analysis: The Western media image of China (2017)
- Global Media and China
(Refereed journal article or data article (A1)) - DESCRIPTION OF CARDIAC SURGERY PATIENT’S PAIN PROCESS BASED ON SEMANTIC ANNOTATION OF ELECTRONIC PATIENT RECORD DATA (2017) Kristiina Heikkilä, Anna Axelin, Laura-Maria Peltonen, Pauliina Anttila, Juho Heimonen, Timo Viljanen, Tapio Salakoski, Sanna Salanterä
(Other (O2)) - Health check documentation of psychosocial factors using the WAI (2017)
- Occupational Medicine
(Refereed journal article or data article (A1)) - Comparison of automatic summarisation methods for clinical free text notes (2016)
- Artificial Intelligence in Medicine
(Refereed journal article or data article (A1)) - Terveydenhuollon lähiesimiehen työn tehostaminen älykkäällä tiedonhallinnalla akuuttihoidossa (2016) Sanna Salanterä, Stefan Grönroos, Juho Heimonen, Elina Kontio, Heikki Korvenranta, Johan Lilius, Heljä Lundgén-Laine, Laura-Maria Peltonen, Jarno Penttinen, Tapio Salakoski, Eriikka Siirala, Henry Suhonen
(Refereed scientific book or report (C1)) - Documentation of the Clinical Phase of the Cardiac Rehabilitation Process in a Finnish University Hospital District (2014)
- Communications in Computer and Information Science
(Refereed article in conference proceedings (A4)) - On evaluation of automatically generated clinical discharge summaries (2014)
- CEUR Workshop Proceedings
(Refereed article in conference proceedings (A4)) - Properties of Object-Level Cross-Validation Schemes for Symmetric Pair-Input Data (2014) Structural, Syntactic, and Statistical Pattern Recognition Heimonen J, Salakoski T, Pahikkala T
(Refereed article in conference proceedings (A4)) - Sydänleikattujen potilaiden kivun kirjaaminen (2014) Perhe, yhteiskunta ja hoitotiede Heikkilä K, Heimonen J, Salakoski T, Salanterä S
(Refereed article in conference proceedings (A4)) - Using cluster analysis to identify weak signals of lethal trends in aviation and healthcare documentation. (2013)
- International Journal of Networking and Virtual Organisations
(Refereed journal article or data article (A1)) - An Ontology to Improve Accessibility and Quality of Patient Instructions (2012) Proceedings of CLEF 2012 Evaluation Labs and Workshop Juho Heimonen, Tapio Salakoski, Sanna Salanterä
(Refereed article in conference proceedings (A4)) - Avoiding Hazards - What Can Health Care Learn from Aviation? (2012)
- Communications in Computer and Information Science
(Refereed article in conference proceedings (A4)) - EXTRACTING CONTEXTUALIZED COMPLEX BIOLOGICAL EVENTS WITH RICH GRAPH-BASED FEATURE SETS (2011)
- Computational Intelligence
(Refereed journal article or data article (A1)) - Reconstruction of Semantic Relationships from Their Projections in Biomolecular Domain (2010) Proceedings of the 2010 Workshop on Biomedical Natural Language Processing Heimonen J, Björne J, Salakoski T
(Refereed article in conference proceedings (A4)) - Extracting Complex Biological Events with Rich Graph-Based Feature Sets (2009) Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task Björne J, Heimonen J, Ginter F, Airola A, Pahikkala T, Salakoski T
(Refereed article in conference proceedings (A4))