Filip Ginter
 


figint@utu.fi



Office4th floor, 451A


ORCID identifierhttps://orcid.org/0000-0002-5484-6103

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Areas of expertise
natural language processing; human language technology; machine learning; deep learning; resource development

Research community or research topic
human language technology, natural language processing, machine learning applied to human language, both methodological and resource creation research

Biography

I am a researcher at the Department of Computing, University of Turku. My research is in the area of natural language processing. I belong to the TurkuNLP (turkunlp.org) research group.

I was born in 1978 in Ostrava, Czech Republic (Czechoslovakia back then). In 2001, I got a M.Sc. (tech) in computer science at the computer science department of VSB - Technical University Ostrava. My major subject was artificial intelligence. I gained a PhD in computer science in 2007. The title of my thesis is Towards Information Extraction in the Biomedical Domain: Methods and Resources.

As of 2022, I am a professor of language technology and as of 2021 the deputy director of the Department of Computing.



Research

My primary field of research is language technology / natural language processing. In my post-PhD career, I have focused on the development of NLP tools and resources primarily for Finnish, but later also numerous other languages via the Universal Dependencies project. My work is heavy on resource development, both in terms of data and machine learning pipelines. Open science and resources play an important role in my research, much of which is carried out in the open on GitHub and as a rule, all resources are openly available for unrestricted use. I work collaboratively, especially with my younger colleagues, rather than striving for deeper, primary author inquiries.



Teaching

I have been actively teaching since early on during my PhD studies. I independently prepared my first advanced level NLP course in 2004, and since ca. 2008 I have been teaching at least one course every year, substantially more during my bioinformatics lecturer appointment. While a lecturer in the bioinformatics MSc degree programme, I was lecturing international students in two cities. In 2016, I was tasked with developing and coordinating the introduction of a new 20 ECTS study module on natural language processing. This module is, with modifications, still in use and shared between the departments of Languages and Computing, both in terms of teaching and in terms of students. In 2019-2020 and 2020-2021 I was also co-lecturing, upon invitation, two courses in natural language processing in the Arcada University of Applied Sciences in Helsinki.



Publications
  
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  • Tekstien pitkä elämä: Ajassa liikkuvat tekstit suomalaisessa sanomalehdistössä 1771-1920  (2019)  
    • Ennen ja nyt : Historian tietosanomat
     Rantala Heli, Salmi Hannu, Vesanto Aleksi, Ginter Filip
    (
    A1 Refereed original research article in a scientific journal)


  • Tekstien uudelleenkäyttö suomalaisessa sanoma- ja aikakauslehdistössä 1771–1920. Digitaalisten ihmistieteiden näkökulma  (2019)  
    • Historiallinen Aikakauskirja
     Rantala Heli, Salmi Hannu, Nivala Asko, Paju Petri, Sippola Reetta, Vesanto Aleksi, Ginter Filip
    (
    A1 Refereed original research article in a scientific journal)


  • Template-free Data-to-Text Generation of Finnish Sports News  (2019)  
    • Linköping Electronic Conference Proceedings
    Proceedings of the 22nd Nordic Conference on Computational Linguistics (NoDaLiDa), September 30–October 2, Turku, Finland Jenna Kanerva, Samuel Rönnqvist, Riina Kekki, Tapio Salakoski, Filip Ginter
    (
    A4 Refereed article in a conference publication )


  • The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens  (2019)  
    • Genome Biology
     Naihui Zhou, Yuxiang Jiang, Timothy R. Bergquist, Alexandra J. Lee, Balint Z. Kacsoh, Alex W. Crocker, Kimberley A. Lewis, George Georghiou, Huy N. Nguyen, Md Nafiz Hamid, Larry Davis, Tunca Dogan, Volkan Atalay, Ahmet S. Rifaioglu, Alperen Dalkıran, Rengul Cetin Atalay, Chengxin Zhang, Rebecca L. Hurto, Peter L. Freddolino, Yang Zhang, Prajwal Bhat, Fran Supek, José M. Fernández, Branislava Gemovic, Vladimir R. Perovic, Radoslav S. Davidović, Neven Sumonja, Nevena Veljkovic, Ehsaneddin Asgari, Mohammad R.K. Mofrad, Giuseppe Profiti, Castrense Savojardo, Pier Luigi Martelli, Rita Casadio, Florian Boecker, Heiko Schoof, Indika Kahanda, Natalie Thurlby, Alice C. McHardy, Alexandre Renaux, Rabie Saidi, Julian Gough, Alex A. Freitas, Magdalena Antczak, Fabio Fabris, Mark N. Wass, Jie Hou, Jianlin Cheng, Zheng Wang, Alfonso E. Romero, Alberto Paccanaro, Haixuan Yang, Tatyana Goldberg, Chenguang Zhao, Liisa Holm, Petri Törönen, Alan J. Medlar, Elaine Zosa, Itamar Borukhov, Ilya Novikov, Angela Wilkins, Olivier Lichtarge, Po-Han Chi, Wei-Cheng Tseng, Michal Linial, Peter W. Rose, Christophe Dessimoz, Vedrana Vidulin, Saso Dzeroski, Ian Sillitoe, Sayoni Das, Jonathan Gill Lees, David T. Jones, Cen Wan, Domenico Cozzetto, Rui Fa, Mateo Torres, Alex Warwick Vesztrocy, Jose Manuel Rodriguez, Michael L. Tress, Marco Frasca, Marco Notaro, Giuliano Grossi, Alessandro Petrini, Matteo Re, Giorgio Valentini, Marco Mesiti, Daniel B. Roche, Jonas Reeb, David W. Ritchie, Sabeur Aridhi, Seyed Ziaeddin Alborzi, Marie-Dominique Devignes, Da Chen Emily Koo, Richard Bonneau, Vladimir Gligorijević, Meet Barot, Hai Fang, Stefano Toppo, Enrico Lavezzo, Marco Falda, Michele Berselli, Silvio C.E. Tosatto, Marco Carraro, Damiano Piovesan, Hafeez Ur Rehman, Qizhong Mao, Shanshan Zhang, Slobodan Vucetic, Gage S. Black, Dane Jo, Erica Suh, Jonathan B. Dayton, Dallas J. Larsen, Ashton R. Omdahl, Liam J. McGuffin, Danielle A. Brackenridge, Patricia C. Babbitt, Jeffrey M. Yunes, Paolo Fontana, Feng Zhang, Shanfeng Zhu, Ronghui You, Zihan Zhang, Suyang Dai, Shuwei Yao, Weidong Tian, Renzhi Cao, Caleb Chandler, Miguel Amezola, Devon Johnson, Jia-Ming Chang, Wen-Hung Liao, Yi-Wei Liu, Stefano Pascarelli, Yotam Frank, Robert Hoehndorf, Maxat Kulmanov, Imane Boudellioua, Gianfranco Politano, Stefano Di Carlo, Alfredo Benso, Kai Hakala, Filip Ginter, Farrokh Mehryary, Suwisa Kaewphan, Jari Björne, Hans Moen, Martti E.E. Tolvanen, Tapio Salakoski, Daisuke Kihara, Aashish Jain, Tomislav Šmuc, Adrian Altenhoff, Asa Ben-Hur, Burkhard Rost, Steven E. Brenner, Christine A. Orengo, Constance J. Jeffery, Giovanni Bosco, Deborah A. Hogan, Maria J. Martin, Claire O’Donovan, Sean D. Mooney, Casey S. Greene, Predrag Radivojac, Iddo Friedberg
    (
    A1 Refereed original research article in a scientific journal)


  • The Long-Term Reuse of Text in the Finnish Press, 1771–1920  (2019)  
    • CEUR Workshop Proceedings
    Proceedings of the Digital Humanities in the Nordic Countries 4th Conference (DHN 2019), Copenhagen, Denmark, March 5-8, 2019 Salmi Hannu, Rantala Heli, Vesanto Aleksi, Ginter Filip
    (
    A4 Refereed article in a conference publication )


  • A bottom-up analysis of sentence-initial DRDs in the Finnish Internet  (2018)   Veronika Laippala, Aki-Juhani Kyröläinen, Filip Ginter, Jenna Kanerva, Johanna Komppa, Jyrki
    Kalliokoski

    (
    D3 Article in a professional conference publication)


  • Återanvändningen av text i den finska tidningspressen 1771–1853  (2018)  
    • Historisk Tidskrift För Finland
     Salmi Hannu, Nivala Asko, Rantala Heli, Sippola Reetta, Vesanto Aleksi, Ginter Filip
    (
    A1 Refereed original research article in a scientific journal)


  • Combining support vector machines and LSTM networks for chemical-protein relation extraction  (2018)  Proceedings of the BioCreative VI Workshop Farrokh​ Mehryary,​​ Jari​ Björne​,​ Tapio​ Salakoski​,​ Filip​ Ginter​
    (
    A4 Refereed article in a conference publication )


  • CoNLL 2018 Shared Task: Multilingual Parsing from Raw Text to Universal Dependencies  (2018)  Proceedings of the CoNLL 2018 Shared Task: Multilingual Parsing from Raw Text to Universal Dependencies Daniel Zeman, Jan Hajiˇc, Martin Popel, Martin Potthast, Milan Straka, Filip Ginter, Joakim Nivre, Slav Petrov
    (
    A4 Refereed article in a conference publication )


  • Data and systems for medication-related text classification and concept normalization from Twitter: insights from the Social Media Mining for Health (SMM4H)-2017 shared task  (2018)  
    • Journal of the American Medical Informatics Association
     Abeed Sarker, Maksim Belousov, Jasper Friedrichs, Kai Hakala, Svetlana Kiritchenko, Farrokh Mehryary, Sifei Han, Tung Tran, Anthony Rios, Ramakanth Kavuluru, Berry de Bruijn, Filip Ginter, Debanjan Mahata, Saif M. Mohammad, Goran Nenadic, Graciela Gonzalez-Hernandez
    (
    A1 Refereed original research article in a scientific journal)



Last updated on 30/01/2025 05:59:45 PM