Pekka Ruusuvuori

- ,
InFLAMES Flagship (Faculty of Medicine)
- Associate Professor,
Institute of Biomedicine (Faculty of Medicine)

pekka.ruusuvuori@utu.fi

+358 29 450 2132

+358 50 472 1830

Kiinamyllynkatu 10

Turku

2 of 3

Domain-specific transfer learning in the automated scoring of tumor-stroma ratio from histopathological images of colorectal cancer (2023)
- PLoS ONE
Petäinen Liisa, Väyrynen Juha P., Ruusuvuori Pekka, Pölönen Ilkka, Äyrämö Sami, Kuopio Teijo
Genomic characterization of IDH-mutant astrocytoma progression to grade 4 in the treatment setting (2023)
- Acta Neuropathologica Communications
Rautajoki Kirsi, Jaatinen Serafiina, Hartewig Anja, Tiihonen Aliisa, Annala Matti, Salonen Iida, Valkonen Masi, Simola Vili, Vuorinen Elisa M., Kivinen Anni, Rauhala Minna, Nurminen Riikka, Maass Kendra, Lahtela Sirpa-Liisa, Jukkola Arja, Yli-Harja Olli, Helen Pauli, Pajtler Kristian, Ruusuvuori Pekka, Haapasalo Joonas, Zhang Wei, Haapasalo Hannu, Nykter Matti
Improved accuracy in colorectal cancer tissue decomposition through refinement of established deep learning solutions (2023)
- Scientific Reports
Prezja Fabi, Äyrämö Sami, Pölönen Ilkka, Ojala Timo, Lahtinen Suvi, Ruusuvuori Pekka, Kuopio Teijo
Interobserver reproducibility of cribriform cancer in prostate needle biopsies and validation of International Society of Urological Pathology criteria (2023)
- Histopathology
Egevad Lars, Delahunt Brett, Iczkowski Kenneth A, van der Kwast Theo, van Leenders Geert JLH, Leite Katia RM, Pan Chin-Chen, Samaratunga Hemamali, Tsuzuki Toyonori, Mulliqi Nita, Ji Xiaoyi, Olsson Henrik, Valkonen Masi, Ruusuvuori Pekka, Eklund Martin, Kartasalo Kimmo
STAGETOOL, a Novel Automated Approach for Mouse Testis Histological Analysis (2023)
- Endocrinology
Meikar Oliver, Majoral Daniel, Heikkinen Olli, Valkama Eero, Leskinen Sini, Rebane Ana, Ruusuvuori Pekka, Toppari Jorma, Mäkelä Juho-Antti, Kotaja Noora
The effect of neural network architecture on virtual H&E staining: Systematic assessment of histological feasibility (2023)
- Patterns
Khan Umair, Koivukoski Sonja, Valkonen Mira, Latonen Leena, Ruusuvuori Pekka
Unstained Tissue Imaging and Virtual Hematoxylin and Eosin Staining of Histologic Whole Slide Images (2023)
- Laboratory Investigation
Koivukoski Sonja, Khan Umair, Ruusuvuori Pekka, Latonen Leena
Artificial intelligence for diagnosis and Gleason grading of prostate cancer: the PANDA challenge (2022)
- Nature Medicine
Bulten Wouter, Kartasalo Kimmo, Chen Po-Hsuan Cameron, Ström Peter, Pinckaers Hans, Nagpal Kunal, Cai Yuannan, Steiner David F., van Boven Hester, Vink Robert, Hulsbergen-van de Kaa Christina, van der Laak Jeroen, Amin Mahul B., Evans Andrew J., van der Kwast Theodorus, Allan Robert, Humphrey Peter A., Grönberg Henrik, Samaratunga Hemamali, Delahunt Brett, Tsuzuki Toyonori, Häkkinen Tomi, Egevad Lars, Demkin Maggie, Dane Sohier, Tan Fraser, Valkonen Masi, Corrado Greg S., Peng Lily, Mermel Craig H., Ruusuvuori Pekka, Litjens Geert, Eklund Martin, the PANDA challenge consortium
Detection of perineural invasion in prostate needle biopsies with deep neural networks (2022)
- Virchows Archiv
Kartasalo Kimmo, Ström Peter, Ruusuvuori Pekka, Samaratunga Hemamali, Delahunt Brett, Tsuzuki Toyonori, Eklund Martin, Egevad Lars
Estimating diagnostic uncertainty in artificial intelligence assisted pathology using conformal prediction (2022)
- Nature Communications
Olsson Henrik, Kartasalo Kimmo, Mulliqi Nita, Capuccini Marco, Ruusuvuori Pekka, Samaratunga Hemamali, Delahunt Brett, Lindskog Cecilia, Janssen Emiel A.M., Blilie Anders, Egevad Lars, Spjuth Ola, Eklund Martin
H&E Multi-Laboratory Staining Variance Exploration with Machine Learning (2022)
- Applied Sciences
Prezja Fabi, Polonen Ilkka, Ayramo Sami, Ruusuvuori Pekka, Kuopio Teijo
miR-32 promotes MYC-driven prostate cancer (2022)
- Oncogenesis
Scaravilli Mauro, Koivukoski Sonja, Gillen Andrew, Bouazza Aya, Ruusuvuori Pekka, Visakorpi Tapio, Latonen Leena
Parametric modeling in biomedical image synthesis (2022) Biomedical Image Synthesis and Simulation: Methods and Applications Ruusuvuori Pekka
Spatial analysis of histology in 3D: quantification and visualization of organ and tumor level tissue environment (2022)
- Heliyon
Ruusuvuori Pekka, Valkonen Masi, Kartasalo Kimmo, Valkonen Mira, Visakorpi Tapio, Nykter Mira, Latonen Leena
Artificial Intelligence for Diagnosis and Gleason Grading of Prostate Cancer in Biopsies-Current Status and Next Steps (2021)
- European Urology Focus
Kartasalo Kimmo, Bulten Wouter, Delahunt Brett, Chen Po-Hsuan Cameron, Pinckaers Hans, Olsson Henrik, Ji Xiaoyi, Mulliqi Nita, Samaratunga Hemamali, Tsuzuki Toyonori, Lindberg Johan, Rantalainen Mattias, Wählby Carolina, Litjens Geert, Ruusuvuori Pekka, Egevad Lars, Eklund Martin
Building a central repository landmarks a new era for artificial intelligence-assisted digital pathology development in Europe (2021)
- European Journal of Cancer
Latonen Leena, Ruusuvuori Pekka
Convolutional Neural Network-Based Artificial Intelligence for Classification of Protein Localization Patterns (2021)
- Biomolecules
Liimatainen Kaisa, Huttunen Riku, Latonen Leena, Ruusuvuori Pekka
Generalized fixation invariant nuclei detection through domain adaptation based deep learning (2021)
- IEEE Journal of Biomedical and Health Informatics
Valkonen Mira, Högnäs Gunilla, Bova G Steven, Ruusuvuori Pekka
Interobserver reproducibility of perineural invasion of prostatic adenocarcinoma in needle biopsies (2021)
- Virchows Archiv
Egevad Lars, Delahunt Brett, Samaratunga Hemamali, Tsuzuki Toyonori, Olsson Henrik, Ström Peter, Lindskog Cecilia, Häkkinen Tomi, Kartasalo Kimmo, Eklund Martin, Ruusuvuori Pekka
OpenPhi: an interface to access Philips iSyntax whole slide images for computational pathology (2021)
- Bioinformatics
Mulliqi Nita, Kartasalo Kimmo, Olsson Henrik, Ji Xiaoyi, Egevad Lars, Eklund Martin, Ruusuvuori Pekka