Sampo Pyysalo
sampo.pyysalo@utu.fi ORCID identifier: https://orcid.org/0000-0002-6279-5000 |
natural language processing; machine learning; scientific text mining
I am a researcher in the TurkuNLP group (https://turkunlp.org/) and Research Fellow at the Department of Computing, University of Turku. My work focuses on machine learning for natural language processing, with particular application domains including scientific text mining, Finnish language technology, and large language models.
After defending my PhD thesis in computer science at the University of Turku, I held researcher positions at the University of Tokyo, University of Manchester and University of Cambridge before returning to the University of Turku in 2019.
The primary focus of my research is on natural language processing using machine learning approaches, with recent emphasis on deep learning methods and large language models. I have been working on scientific text mining as an application area for nearly 20 years, with specific focus on the English biomedical literature, and have in recent years also addressed a variety of tasks in the processing of Finnish text as well as multi- and cross-lingual applications. My work covers the full range of natural language processing development from initial task design to the development of practical applications and organizing community challenges, including also running manual annotation efforts and developing annotation tools and machine learning methods for various natural language processing tasks.
My current teaching focuses on the natural language processing study module shared between the departments of Languages and Computing, with courses ranging from introductory to a course on deep learning for natural language processing.
- Dependency parsing of biomedical text with BERT (2020)
- BMC Bioinformatics
(A1 Refereed original research article in a scientific journal) - Exploring Cross-sentence Contexts for Named Entity Recognition with BERT (2020)
- Proceedings of COLING: International Conference on Computational Linguistics
(A4 Refereed article in a conference publication ) - From Web Crawl to Clean Register-Annotated Corpora (2020) Proceedings of the 12th Web as Corpus Workshop Laippala Veronika, Rönnqvist Samuel, Hellström Saara, Luotolahti, Juhani, Repo Liina, Salmela Anna, Skantsi Valtteri and Pyysalo Sampo
(A4 Refereed article in a conference publication ) - The birth of Romanian BERT (2020)
- Annual Meeting of the Association for Computational Linguistics
(A4 Refereed article in a conference publication ) - Turku Enhanced Parser Pipeline: From Raw Text to Enhanced Graphs in the IWPT 2020 Shared Task (2020)
- Annual Meeting of the Association for Computational Linguistics
(A4 Refereed article in a conference publication ) - Universal Dependencies v2: An Evergrowing Multilingual Treebank Collection (2020) Proceedings of the 12th Language Resources and Evaluation Conference Joakim Nivre, Marie-Catherine de Marneffe, Filip Ginter, Jan Hajič, Christopher D. Manning, Sampo Pyysalo, Sebastian Schuster, Francis Tyers, Daniel Zeman
(A4 Refereed article in a conference publication ) - Biomedical Named Entity Recognition with Multilingual BERT (2019) Proceedings of The 5th Workshop on BioNLP Open Shared Tasks Hakala Kai, Pyysalo Sampo
(A4 Refereed article in a conference publication ) - CRAFT Shared Tasks 2019 Overview - Integrated Structure, Semantics,and Coreference (2019) Proceedings of the 5th Workshop on BioNLP Open Shared Tasks William A Baumgartner Jr., Michael Bada, Sampo Pyysalo, Manuel R. Ciosici, Negacy Hailu, Harrison Pielke-Lombardo, Michael Regan, Lawrence Hunter
(A4 Refereed article in a conference publication ) - Neural Dependency Parsing of Biomedical Text: TurkuNLP entry in the CRAFT Structural Annotation Task (2019) Proceedings of the 5th Workshop on BioNLP Open Shared Tasks Thang Minh Ngo, Jenna Kanerva, Filip Ginter, Sampo Pyysalo
(A4 Refereed article in a conference publication ) - Toward Multilingual Identification of Online Registers (2019)
- Linköping Electronic Conference Proceedings
(A4 Refereed article in a conference publication )



