Guillaume Jacquemet
 PhD


guillaume.jacquemet@utu.fi




ORCID identifier: https://orcid.org/0000-0002-9286-920X

Publications
  
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  • Customizable FDM-based zebrafish larva mold for live imaging  (2026)  
    • Biology Open
     Rivera Pineda, Marcela Xiomara; Lehtimäki, Jaakko; Jacquemet, Guillaume
    (    A1 Refereed original research article in a scientific journal)


  • Fast label-free live imaging with FlowVision reveals key principles of cancer cell arrest on endothelial monolayers  (2026)  
    • EMBO Journal
     Follain, Gautier; Ghimire, Sujan; Pylvänäinen, Joanna W; Vaitkevičiūtė, Monika; Hidalgo-Cenalmor, Iván; Wurzinger, Diana; Guzmán, Camilo; Conway, James R W; Dibus, Michal; Härkönen, Jouni; Oikari, Sanna; Rilla, Kirsi; Salmi, Marko; Ivaska, Johanna; Jacquemet, Guillaume
    (    A1 Refereed original research article in a scientific journal)


  • Roadmap on deep learning for microscopy  (2026)  
    • JPhys photonics
     Volpe, Giovanni; Wahlby, Carolina; Tian, Lei; Hecht, Michael; Yakimovich, Artur; Monakhova, Kristina; Waller, Laura; Sbalzarini, Ivo F.; Metzler, Christopher A.; Xie, Mingyang; Zhang, Kevin; Lenton, Isaac C. D.; Rubinsztein-Dunlop, Halina; Brunner, Daniel; Bai, Bijie; Ozcan, Aydogan; Midtvedt, Daniel; Wang, Hao; Li, Tongyu; Sladoje, Natasa; Lindblad, Joakim; Smith, Jason T.; Ochoa, Marien; Barroso, Margarida; Intes, Xavier; Qiu, Tong; Yu, Li-Yu; You, Sixian; Liu, Yongtao; Ziatdinov, Maxim A.; Kalinin, Sergei, V; Sheridan, Arlo; Manor, Uri; Nehme, Elias; Goldenberg, Ofri; Shechtman, Yoav; Moberg, Henrik K.; Langhammer, Christoph; Spackova, Barbora; Helgadottir, Saga; Midtvedt, Benjamin; Argun, Aykut; Thalheim, Tobias; Cichos, Frank; Bo, Stefano; Hubatsch, Lars; Pineda, Jesus; Manzo, Carlo; Bachimanchi, Harshith; Selander, Erik; Homs-Corbera, Antoni; Franzl, Martin; De Haan, Kevin; Rivenson, Yair; Korczak, Zofia; Adiels, Caroline Beck; Mijalkov, Mite; Vereb, Daniel; Chang, Yu-Wei; Pereira, Joana B.; Matuszewski, Damian; Kylberg, Gustaf; Sintorn, Ida-Maria; Caicedo, Juan C.; Cimini, Beth A.; Lediju Bell, Muyinatu A.; Saraiva, Bruno M.; Jacquemet, Guillaume; Henriques, Ricardo; Ouyang, Wei; Le, Trang; Gomez-de-Mariscal, Estibaliz; Sage, Daniel; Munoz-Barrutia, Arrate; Lindqvist, Ebba Josefson; Bergman, Johanna
    (    A2 Refereed review article in a scientific journal )


  • Efficiently accelerated bioimage analysis with NanoPyx, a Liquid Engine-powered Python framework  (2025)  
    • Nature Methods
     Saraiva, Bruno M.; Cunha, Inês; Brito, António D.; Follain, Gautier; Portela, Raquel; Haase, Robert; Pereira, Pedro M.; Jacquemet, Guillaume; Henriques, Ricardo
    (    A1 Refereed original research article in a scientific journal)


  • Nuclear talin-1 provides a bridge between cell adhesion and gene expression  (2025)  
    • iScience
     Da Silva, Alejandro J.; Hästbacka, Hendrik S. E.; Puustinen, Mikael C.; Pessa, Jenny C.; Luoto, Jens C.; Sundström, Erika; Goult, Benjamin T.; Jacquemet, Guillaume; Henriksson, Eva; Sistonen, Lea
    (    A1 Refereed original research article in a scientific journal)


  • PhotoFiTT: a quantitative framework for assessing phototoxicity in live-cell microscopy experiments  (2025)  
    • Nature Communications
     Del Rosario, Mario; Gómez-de-Mariscal, Estibaliz; Morgado, Leonor; Portela, Raquel; Jacquemet, Guillaume; Pereira, Pedro M.; Henriques, Ricardo
    (    A1 Refereed original research article in a scientific journal)


  • Practical considerations for data exploration in quantitative cell biology  (2025)  
    • Journal of Cell Science
     Pylvänäinen, Joanna W.; Grobe, Hanna; Jacquemet, Guillaume
    (    A1 Refereed original research article in a scientific journal)


  • Practical recommendations for developing software for life science applications  (2025)  
    • Journal of Cell Science
     Pylvänäinen, Joanna W.; Jacquemet, Guillaume; Marcotti, Stefania
    (    B1 Non-refereed article in a scientific journal)


  • Regulation of cell dynamics by rapid integrin transport through the biosynthetic pathway  (2025)  
    • Journal of Cell Biology
     Lerche, Martina; Mathieu, Mathilde; Hamidi, Hellyeh; Chastney, Megan; Jacquemet, Guillaume; Bruininks, Bart Marlon Herwig; Kaptan, Shreyas; Malerød, Lene; Pedersen, Nina Marie; Brech, Andreas; Matoba, Nobuyuki; Sato, Yuichiro; Vattulainen, Ilpo; Roca-Cusachs, Pere; Perez, Franck; Boncompain, Gaelle; Miserey, Stéphanie; Ivaska, Johanna
    (    A1 Refereed original research article in a scientific journal)


  • Structural Repetition Detector for multi-scale quantitative mapping of molecular complexes through microscopy  (2025)  
    • Nature Communications
     Mendes, Afonso; Saraiva, Bruno M.; Jacquemet, Guillaume; Mamede, Joao I.; Leterrier, Christophe; Henriques, Ricardo
    (    A1 Refereed original research article in a scientific journal)


  • Time, the final frontier  (2025)  
    • Molecular Oncology
     Follain, Gautier; Dibus, Michal; Joshi, Omkar; Jacquemet, Guillaume
    (    A2 Refereed review article in a scientific journal )


  • CellTracksColab is a platform that enables compilation, analysis, and exploration of cell tracking data  (2024)  
    • PLoS Biology
     Gómez-de-Mariscal, Estibaliz; Grobe, Hanna; Pylvänäinen, Joanna W.; Xénard, Laura; Henriques, Ricardo; Tinevez, Jean-Yves; Jacquemet, Guillaume
    (    A1 Refereed original research article in a scientific journal)


  • DL4MicEverywhere: deep learning for microscopy made flexible, shareable and reproducible  (2024)  
    • Nature Methods
     Hidalgo-Cenalmor, Iván; Pylvänäinen, Joanna W.; Ferreira, Mariana G.; Russell, Craig T.; Saguy, Alon; Arganda-Carreras, Ignacio; Shechtman, Yoav; Jacquemet, Guillaume; Henriques, Ricardo; Gómez-de-Mariscal, Estibaliz; AI4Life Horizon Europe Program Consortium
    (    B1 Non-refereed article in a scientific journal)


  • Harnessing artificial intelligence to reduce phototoxicity in live imaging  (2024)  
    • Journal of Cell Science
     Gómez-de-Mariscal Estibaliz, Del Rosario Mario, Pylvänäinen Joanna W, Jacquemet Guillaume, Henriques Ricardo
    (    A1 Refereed original research article in a scientific journal)


  • Imaging cell architecture and dynamics  (2024)  
    • Journal of Cell Science
     Collinson, Lucy; Jacquemet, Guillaume
    (    B1 Other refereed article (e.g., editorial, letter, comment) in a scientific journal)


  • SHANK3 depletion leads to ERK signalling overdose and cell death in KRAS-mutant cancers  (2024)  
    • Nature Communications
     Lilja, Johanna; Kaivola, Jasmin; Conway, James R. W.; Vuorio, Joni; Parkkola, Hanna; Roivas, Pekka; Dibus, Michal; Chastney, Megan R.; Varila, Taru; Jacquemet, Guillaume; Peuhu, Emilia; Wang, Emily; Pentikäinen, Ulla; Posada, Itziar Martinez D.; Hamidi, Hellyeh; Najumudeen, Arafath K.; Sansom, Owen J.; Barsukov, Igor L.; Abankwa, Daniel; Vattulainen, Ilpo; Salmi, Marko; Ivaska, Johanna
    (    A1 Refereed original research article in a scientific journal)


  • TLNRD1 is a CCM complex component and regulates endothelial barrier integrity  (2024)  
    • Journal of Cell Biology
     Ball, Neil J.; Ghimire, Sujan; Follain, Gautier; Pajari, Ada O.; Wurzinger, Diana; Vaitkevičiūtė, Monika; Cowell, Alana R.; Berki, Bence; Ivaska, Johanna; Paatero, Ilkka; Goult, Benjamin T.; Jacquemet, Guillaume
    (    A1 Refereed original research article in a scientific journal)


  • Fast4DReg – fast registration of 4D microscopy datasets  (2023)  
    • Journal of Cell Science
     Pylvänäinen Joanna W., Laine Romain F., Saraiva Bruno M.S., Ghimire Sujan, Follain Gautier, Henriques Ricardo, Jacquemet Guillaume
    (    A1 Refereed original research article in a scientific journal)


  • High-fidelity 3D live-cell nanoscopy through data-driven enhanced super-resolution radial fluctuation  (2023)  
    • Nature Methods
     Laine R.F., Heil H.S., Coelho S., Nixon-Abell J., Jimenez A., Wiesner T., Martínez D., Galgani T., Régnier L., Stubb A., Follain G., Webster S., Goyette J., Dauphin A., Salles A., Culley S., Jacquemet G., Hajj B., Leterrier C., Henriques R.
    (    A1 Refereed original research article in a scientific journal)


  • Live-cell imaging in the deep learning era  (2023)  
    • Current Opinion in Cell Biology
     Pylvänäinen Joanna W., Gómez-de-Mariscal Estibaliz, Henriques Ricardo, Jacquemet Guillaume
    (    A2 Refereed review article in a scientific journal )



Last updated on 12/07/2023 12:35:53 PM