A1 Journal article – refereed
Stability estimation of autoregulated genes under Michaelis-Menten-type kinetics




List of Authors: Arani BMS, Mahmoudi M, Lahti L, Gonzalez J, Wit EC
Publisher: AMER PHYSICAL SOC
Publication year: 2018
Journal name in source: PHYSICAL REVIEW E
Journal acronym: PHYS REV E
Volume number: 97
Issue number: 6
ISSN: 2470-0045
eISSN: 2470-0053

Abstract
Feedback loops are typical motifs appearing in gene regulatory networks. In some well-studied model organisms, including Escherichia coli, autoregulated genes, i.e., genes that activate or repress themselves through their protein products, are the only feedback interactions. For these types of interactions, the Michaelis-Menten (MM) formulation is a suitable and widely used approach, which always leads to stable steady-state solutions representative of homeostatic regulation. However, in many other biological phenomena, such as cell differentiation, cancer progression, and catastrophes in ecosystems, one might expect to observe bistable switchlike dynamics in the case of strong positive autoregulation. To capture this complex behavior we use the generalized family of MM kinetic models. We give a full analysis regarding the stability of autoregulated genes. We show that the autoregulation mechanism has the capability to exhibit diverse cellular dynamics including hysteresis, a typical characteristic of bistable systems, as well as irreversible transitions between bistable states. We also introduce a statistical framework to estimate the kinetics parameters and probability of different stability regimes given observational data. Empirical data for the autoregulated gene SCO3217 in the SOS system in Streptomyces coelicolor are analyzed. The coupling of a statistical framework and the mathematical model can give further insight into understanding the evolutionary mechanisms toward different cell fates in various systems.


Internal Authors/Editors

Last updated on 2019-29-01 at 20:07