Tapio Salakoski


Professor, Language and Speech Technology (Department of Future Technologies)
Faculty of Science and Engineering
tapio.salakoski@utu.fi
+358 29 450 2708
+358 40 032 6978

Vesilinnantie 5
Turku
Agora





Areas of expertise
Artificial Intelligence, especially Language technology and Machine Learning
Bio and Health Informatics
Learning Analytics and Technology
Digital Humanities


Publications
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Improving layman readability of clinical narratives with unsupervised synonym replacement (2018)Moen H., Peltonen L., Koivumäki M., Suhonen H., Salakoski T., Ginter F., Salanterä S.
(
A3 Book chapter)

Ontology Development for Patient Education Documents Using a Professional- and Patient-Oriented Delphi Method (2018)
Computers, Informatics, Nursing
Juho Heimonen, Riitta Danielsson-Ojala, Tapio Salakoski, Heljä Lundgren-Laine, Sanna Salanterä
(
A1 Journal article – refereed)

Wide-scope biomedical named entity recognition and normalization with CRFs, fuzzy matching and character level modeling (2018)
Database: The Journal of Biological Databases and Curation
Suwisa Kaewphan, Kai Hakala, Niko Miekka, Tapio Salakoski, Filip Ginter
(
A1 Journal article – refereed)

Applying BLAST to Text Reuse Detection in Finnish Newspapers and Journals, 1771–1910 (2017)Aleksi Vesanto, Asko Nivala, Heli Rantala, Tapio Salakoski, Hannu Salmi, Filip Ginter
(
A4 Article in conference proceedings)

Assessment of metal ion concentration in water with structured feature selection (2017)
Chemosphere
Naula P, Airola A, Pihlasalo S, Perez IM, Salakoski T, Pahikkala T
(
A1 Journal article – refereed)

A System for Identifying and Exploring Text Repetition in Large Historical Document Corpora (2017)Aleksi Vesanto, Asko Nivala, Tapio Salakoski, Hannu Salmi, Filip Ginter
(
A4 Article in conference proceedings)

Automated quantification of Reuters news using a receiver operating characteristic curve analysis: The Western media image of China (2017)
Global Media and China
Aukia Jukka, Heimonen Juho, Pahikkala Tapio, Salakoski Tapio
(
A1 Journal article – refereed)

Creating register sub-corpora for the Finnish Internet Parsebank. (2017)
Linköping Electronic Conference Proceedings
Laippala Veronika, Luotolahti Juhani, Kyröläinen Aki-Juhani, Salakoski Tapio, Ginter Filip
(
A4 Article in conference proceedings)

DESCRIPTION OF CARDIAC SURGERY PATIENT’S PAIN PROCESS BASED ON SEMANTIC ANNOTATION OF ELECTRONIC PATIENT RECORD DATA (2017)Kristiina Heikkilä, Anna Axelin, Laura-Maria Peltonen, Pauliina Anttila, Juho Heimonen, Timo Viljanen, Tapio Salakoski, Sanna Salanterä
(
O2 Other)

Detecting mentions of pain and acute confusion in Finnish clinical text (2017)Hans Moen, Kai Hakala, Farrokh Mehryary, Laura-Maria Peltonen, Tapio Salakoski, Filip Ginter, Sanna Salanterä
(
A4 Article in conference proceedings)

Distributional Semantics of the Partitive A Argument Construction in Finnish (2017)Huumo Tuomas, Kyröläinen Aki-Juhani, Kanerva Jenna, Luotolahti M. Juhani, Salakoski Tapio, Ginter Filip, Laippala Veronika
(
A3 Book chapter)

End-to-End System for Bacteria Habitat Extraction (2017)Farrokh Mehryary, Kai Hakala, Suwisa Kaewphan, Jari Björne, Tapio Salakoski, Filip Ginter
(
A4 Article in conference proceedings)

Ensemble of Convolutional Neural Networks for Medicine Intake Recognition in Twitter (2017)
CEUR Workshop Proceedings
Kai Hakala, Farrokh Mehryary, Hans Moen, Suwisa Kaewphan, Tapio Salakoski, Filip Ginter
(
A4 Article in conference proceedings)

EPE 2017: The Biomedical Event Extraction Downstream Application (2017)Björne J, Ginter F, Salakoski T
(
A4 Article in conference proceedings)

An expanded evaluation of protein function prediction methods shows an improvement in accuracy (2016)
GENOME BIOLOGY
Jiang YX, Oron TR, Clark WT, Bankapur AR, D'Andrea D, Lepore R, Funk CS, Kahanda I, Verspoor KM, Ben-Hur A, Koo DCE, Penfold-Brown D, Shasha D, Youngs N, Bonneau R, Lin A, Sahraeian SME, Martelli PL, Profiti G, Casadio R, Cao RZ, Zhong Z, Cheng JL, Altenhoff A, Skunca N, Dessimoz C, Dogan T, Hakala K, Kaewphan S, Mehryary F, Salakoski T, Ginter F, Fang H, Smithers B, Oates M, Gough J, Toronen P, Koskinen P, Holm L, Chen CT, Hsu WL, Bryson K, Cozzetto D, Minneci F, Jones DT, Chapman S, Dukka BKC, Khan IK, Kihara D, Ofer D, Rappoport N, Stern A, Cibrian-Uhalte E, Denny P, Foulger RE, Hieta R, Legge D, Lovering RC, Magrane M, Melidoni AN, Mutowo-Meullenet P, Pichler K, Shypitsyna A, Li B, Zakeri P, ElShal S, Tranchevent LC, Das S, Dawson NL, Lee D, Lees JG, Sillitoe I, Bhat P, Nepusz T, Romero AE, Sasidharan R, Yang HX, Paccanaro A, Gillis J, Sedeno-Cortes AE, Pavlidis P, Feng S, Cejuela JM, Goldberg T, Hamp T, Richter L, Salamov A, Gabaldon T, Marcet-Houben M, Supek F, Gong QT, Ning W, Zhou YP, Tian WD, Falda M, Fontana P, Lavezzo E, Toppo S, Ferrari C, Giollo M, Piovesan D, Tosatto SCE, del Pozo A, Fernandez JM, Maietta P, Valencia A, Tress ML, Benso A, Di Carlo S, Politano G, Savino A, Rehman HU, Re M, Mesiti M, Valentini G, Bargsten JW, van Dijk ADJ, Gemovic B, Glisic S, Perovic V, Veljkovic V, Veljkovic N, Almeida-e-Silva DC, Vencio RZN, Sharan M, Vogel J, Kansakar L, Zhang S, Vucetic S, Wang Z, Sternberg MJE, Wass MN, Huntley RP, Martin MJ, O'Donovan C, Robinson PN, Moreau Y, Tramontano A, Babbitt PC, Brenner SE, Linial M, Orengo CA, Rost B, Greene CS, Mooney SD, Friedberg I, Radivojac P
(
A1 Journal article – refereed)

Automatically assessed electronic exams in programming courses (2016)Teemu Rajala, Erkki Kaila, Rolf Lindén, Einari Kurvinen, Erno Lokkila, Mikko-Jussi Laakso, Tapio Salakoski
(
A4 Article in conference proceedings)

Automatic Assessment and Immediate Feedback in Third Grade Mathematics (2016)Kurvinen Einari, Lokkila Erno, Lindén Rolf, Kaila Erkki, Laakso Mikko-Jussi, Salakoski Tapio
(
A4 Article in conference proceedings)

Comparison of automatic summarisation methods for clinical free text notes (2016)
Artificial Intelligence in Medicine
Hans Moen, Laura-Maria Peltonen, Juho Heimonen, Antti Airola, Tapio Pahikkala, Tapio Salakoski, Sanna Salanterä
(
A1 Journal article – refereed)

Deep Learning With Minimal Training Data: TurkuNLP Entry in the BioNLP Shared Task 2016 (2016)Farrokh Mehryary, Jari Bjorne, Sampo Pyysalo, Tapio Salakoski, Filip Ginter
(
A4 Article in conference proceedings)

Factors Affecting the Availability of Electronic Patient Records for Secondary Purposes – A Case Study (2016)Antti Vikström, Sanaz Rahimi Moosavi, Hans Moen, Tapio Salakoski, Sanna Salanterä
(
A4 Article in conference proceedings)


Last updated on 2018-31-10 at 14:46