Suwisa Kaewphan


Doctoral Student, Computer Science (Department of Future Technologies)
Doctoral Candidate, Language and Speech Technology (Department of Future Technologies)

sukaew@utu.fi
+358 2 333 7649
Vesilinnantie 5
Turku





Publications

Finding novel relationships with integrated gene-gene association network analysis of Synechocystis sp. PCC 6803 using species-independent text-mining (2018)
PeerJ
Sanna M. Kreula, Suwisa Kaewphan, Filip Ginter, Patrik R. Jones
(
A1 Journal article – refereed)

TurkuNLP Entry for Interactive Bio-ID Assignment (2018) Proceedings of the BioCreative VI Workshop Suwisa Kaewphan, Farrokh Mehryary, Kai Hakala, Tapio Salakoski, Filip Ginter
(
A4 Article in conference proceedings)

Wide-scope biomedical named entity recognition and normalization with CRFs, fuzzy matching and character level modeling (2018)
Database: The Journal of Biological Databases and Curation
Suwisa Kaewphan, Kai Hakala, Niko Miekka, Tapio Salakoski, Filip Ginter
(
A1 Journal article – refereed)

End-to-End System for Bacteria Habitat Extraction (2017) SIGBioMed Workshop on Biomedical Natural Language: Proceedings of the 16th BioNLP Workshop Farrokh Mehryary, Kai Hakala, Suwisa Kaewphan, Jari Björne, Tapio Salakoski, Filip Ginter
(
A4 Article in conference proceedings)

Ensemble of Convolutional Neural Networks for Medicine Intake Recognition in Twitter (2017)
CEUR Workshop Proceedings
Proceedings of the 2nd Social Media Mining for Health Research and Applications Workshop (SMM4H 2017) Kai Hakala, Farrokh Mehryary, Hans Moen, Suwisa Kaewphan, Tapio Salakoski, Filip Ginter
(
A4 Article in conference proceedings)

An expanded evaluation of protein function prediction methods shows an improvement in accuracy (2016)
GENOME BIOLOGY
Jiang YX, Oron TR, Clark WT, Bankapur AR, D'Andrea D, Lepore R, Funk CS, Kahanda I, Verspoor KM, Ben-Hur A, Koo DCE, Penfold-Brown D, Shasha D, Youngs N, Bonneau R, Lin A, Sahraeian SME, Martelli PL, Profiti G, Casadio R, Cao RZ, Zhong Z, Cheng JL, Altenhoff A, Skunca N, Dessimoz C, Dogan T, Hakala K, Kaewphan S, Mehryary F, Salakoski T, Ginter F, Fang H, Smithers B, Oates M, Gough J, Toronen P, Koskinen P, Holm L, Chen CT, Hsu WL, Bryson K, Cozzetto D, Minneci F, Jones DT, Chapman S, Dukka BKC, Khan IK, Kihara D, Ofer D, Rappoport N, Stern A, Cibrian-Uhalte E, Denny P, Foulger RE, Hieta R, Legge D, Lovering RC, Magrane M, Melidoni AN, Mutowo-Meullenet P, Pichler K, Shypitsyna A, Li B, Zakeri P, ElShal S, Tranchevent LC, Das S, Dawson NL, Lee D, Lees JG, Sillitoe I, Bhat P, Nepusz T, Romero AE, Sasidharan R, Yang HX, Paccanaro A, Gillis J, Sedeno-Cortes AE, Pavlidis P, Feng S, Cejuela JM, Goldberg T, Hamp T, Richter L, Salamov A, Gabaldon T, Marcet-Houben M, Supek F, Gong QT, Ning W, Zhou YP, Tian WD, Falda M, Fontana P, Lavezzo E, Toppo S, Ferrari C, Giollo M, Piovesan D, Tosatto SCE, del Pozo A, Fernandez JM, Maietta P, Valencia A, Tress ML, Benso A, Di Carlo S, Politano G, Savino A, Rehman HU, Re M, Mesiti M, Valentini G, Bargsten JW, van Dijk ADJ, Gemovic B, Glisic S, Perovic V, Veljkovic V, Veljkovic N, Almeida-e-Silva DC, Vencio RZN, Sharan M, Vogel J, Kansakar L, Zhang S, Vucetic S, Wang Z, Sternberg MJE, Wass MN, Huntley RP, Martin MJ, O'Donovan C, Robinson PN, Moreau Y, Tramontano A, Babbitt PC, Brenner SE, Linial M, Orengo CA, Rost B, Greene CS, Mooney SD, Friedberg I, Radivojac P
(
A1 Journal article – refereed)

Cell line name recognition in support of the identification of synthetic lethality in cancer from text – Cell line name recognition (2016)
Bioinformatics
Suwisa Kaewphan, Sofie Van Landeghem, Tomoko Ohta, Yves Van de Peer, Filip Ginter, Sampo Pyysalo
(
A1 Journal article – refereed)

Filtering large-scale event collections using a combination of supervised and unsupervised learning for event trigger classification (2016)
Journal of Biomedical Semantics
Mehryary F, Kaewphan S, Hakala K, Ginter F
(
B1 Journal article)

Syntactic analyses and named entity recognition for PubMed and. PubMed Central — up-to-the-minute (2016) Proceedings of the 15th Workshop on Biomedical Natural Language Processing (BioNLP) Kai Hakala, Suwisa Kaewphan, Tapio Salakoski, Filip Ginter
(
A4 Article in conference proceedings)

Eliminating Incorrect Events from Large‐Scale Event Networks by Trigger Word Clustering and Pruning (2014) Proceedings of the 6th International Symposium on Semantic Mining in Biomedicine (SMBM 2014) Farrokh Mehryary, Suwisa Kaewphan, Kai Hakala, Filip Ginter
(
A4 Article in conference proceedings)

UTU: Disease Mention Recognition and Normalization with CRFs and Vector Space Representations (2014) Proceedings of the 8th International Workshop on Semantic Evaluation (SemEval 2014) Suwisa Kaewphan, Kai Hakaka, Filip Ginter
(
A4 Article in conference proceedings)

Evaluating large-scale text mining applications beyond the traditional numeric performance measures (2013) Proceedings of the 2013 Workshop on Biomedical Natural Language Processing (BioNLP'13) Sofie Van Landeghem, Suwisa Kaewphan, Filip Ginter, Yves Van de Peer
(
A4 Article in conference proceedings)

Hypothesis Generation in Large-Scale Event Networks (2013) Proceedings of the 5th International Symposium on Languages in Biology and Medicine (LBM'13) Hakala Kai, Mehryary Farrokh, Kaewphan Suwisa, Ginter Filip
(
A4 Article in conference proceedings)

UTurku: Drug Named Entity Recognition and Drug-Drug Interaction Extraction Using SVM Classification and Domain Knowledge (2013) Second Joint Conference on Lexical and Computational Semantics (*SEM), Volume 2: Proceedings of the Seventh International Workshop on Semantic Evaluation (SemEval 2013) Jari Björne, Suwisa Kaewphan, Tapio Salakoski
(
A4 Article in conference proceedings)

CyEVEX: Literature-scale network integration and visualization through Cytoscape (2012) Hakala Kai, Van Landeghem Sofie, Kaewphan Suwisa, Salakoski Tapio, Van de Peer Yves, Ginter Filip
(
A4 Article in conference proceedings)

Integrating Large-Scale Text Mining and Co-Expression Networks: Targeting NADP(H) Metabolism in E. coli with Event Extraction (2012) Third Workshop on Building and Evaluating Resources for Biomedical Text Mining (BioTxtM 2012) Suwisa Kaewphan, Sanna Kreula, Sofie Van Landeghem, Yves Van de Peer, Patrik R Jones, Filip Ginter
(
A4 Article in conference proceedings)

Lysophosphatidic acid and sphingosine-1-phosphate promote morphogenesis and block invasion of prostate cancer cells in three-dimensional organotypic models (2012)
Oncogene
Härmä V, Knuuttila M, Virtanen J, Mirtti T, Kohonen P, Kovanen P, Happonen A, Kaewphan S, Ahonen I, Kallioniemi O, Grafström R, Lötjönen J, Nees M
(
A1 Journal article – refereed)


Last updated on 2019-24-05 at 02:19