Suwisa Kaewphan
Publications
- Neural Network and Random Forest Models in Protein Function Prediction (2022)
- IEEE/ACM Transactions on Computational Biology and Bioinformatics
(Refereed journal article or data article (A1)) - The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens (2019)
- Genome Biology
(Refereed journal article or data article (A1)) - Finding novel relationships with integrated gene-gene association network analysis of Synechocystis sp. PCC 6803 using species-independent text-mining (2018)
- PeerJ
(Refereed journal article or data article (A1)) - TurkuNLP Entry for Interactive Bio-ID Assignment (2018) Proceedings of the BioCreative VI Workshop Suwisa Kaewphan, Farrokh Mehryary, Kai Hakala, Tapio Salakoski, Filip Ginter
(Refereed article in conference proceedings (A4)) - Wide-scope biomedical named entity recognition and normalization with CRFs, fuzzy matching and character level modeling (2018)
- Database: The Journal of Biological Databases and Curation
(Refereed journal article or data article (A1)) - End-to-End System for Bacteria Habitat Extraction (2017) SIGBioMed Workshop on Biomedical Natural Language: Proceedings of the 16th BioNLP Workshop Farrokh Mehryary, Kai Hakala, Suwisa Kaewphan, Jari Björne, Tapio Salakoski, Filip Ginter
(Refereed article in conference proceedings (A4)) - Ensemble of Convolutional Neural Networks for Medicine Intake Recognition in Twitter (2017)
- CEUR Workshop Proceedings
(Refereed article in conference proceedings (A4)) - An expanded evaluation of protein function prediction methods shows an improvement in accuracy (2016)
- Genome Biology
(Refereed journal article or data article (A1)) - Cell line name recognition in support of the identification of synthetic lethality in cancer from text – Cell line name recognition (2016)
- Bioinformatics
(Refereed journal article or data article (A1)) - Filtering large-scale event collections using a combination of supervised and unsupervised learning for event trigger classification (2016)
- Journal of Biomedical Semantics
(Article or data-article in scientific journal (B1)) - Syntactic analyses and named entity recognition for PubMed and. PubMed Central — up-to-the-minute (2016) Proceedings of the 15th Workshop on Biomedical Natural Language Processing (BioNLP) Kai Hakala, Suwisa Kaewphan, Tapio Salakoski, Filip Ginter
(Refereed article in conference proceedings (A4)) - Eliminating Incorrect Events from Large‐Scale Event Networks by Trigger Word Clustering and Pruning (2014) Proceedings of the 6th International Symposium on Semantic Mining in Biomedicine (SMBM 2014) Farrokh Mehryary, Suwisa Kaewphan, Kai Hakala, Filip Ginter
(Refereed article in conference proceedings (A4)) - UTU: Disease Mention Recognition and Normalization with CRFs and Vector Space Representations (2014) Proceedings of the 8th International Workshop on Semantic Evaluation (SemEval 2014) Suwisa Kaewphan, Kai Hakaka, Filip Ginter
(Refereed article in conference proceedings (A4)) - Evaluating large-scale text mining applications beyond the traditional numeric performance measures (2013) Proceedings of the 2013 Workshop on Biomedical Natural Language Processing (BioNLP'13) Sofie Van Landeghem, Suwisa Kaewphan, Filip Ginter, Yves Van de Peer
(Refereed article in conference proceedings (A4)) - Hypothesis Generation in Large-Scale Event Networks (2013) Proceedings of the 5th International Symposium on Languages in Biology and Medicine (LBM'13) Hakala Kai, Mehryary Farrokh, Kaewphan Suwisa, Ginter Filip
(Refereed article in conference proceedings (A4)) - UTurku: Drug Named Entity Recognition and Drug-Drug Interaction Extraction Using SVM Classification and Domain Knowledge (2013) Second Joint Conference on Lexical and Computational Semantics (*SEM), Volume 2: Proceedings of the Seventh International Workshop on Semantic Evaluation (SemEval 2013) Jari Björne, Suwisa Kaewphan, Tapio Salakoski
(Refereed article in conference proceedings (A4)) - CyEVEX: Literature-scale network integration and visualization through Cytoscape (2012) Hakala Kai, Van Landeghem Sofie, Kaewphan Suwisa, Salakoski Tapio, Van de Peer Yves, Ginter Filip
(Refereed article in conference proceedings (A4)) - Integrating Large-Scale Text Mining and Co-Expression Networks: Targeting NADP(H) Metabolism in E. coli with Event Extraction (2012) Third Workshop on Building and Evaluating Resources for Biomedical Text Mining (BioTxtM 2012) Suwisa Kaewphan, Sanna Kreula, Sofie Van Landeghem, Yves Van de Peer, Patrik R Jones, Filip Ginter
(Refereed article in conference proceedings (A4)) - Lysophosphatidic acid and sphingosine-1-phosphate promote morphogenesis and block invasion of prostate cancer cells in three-dimensional organotypic models (2012)
- Oncogene
(Refereed journal article or data article (A1))