Jari Björne


Postdoctoral Researcher, Language and Speech Technology (Department of Future Technologies)

jakrbj@utu.fi
+358 2 333 8681
Vesilinnantie 5
Turku





Publications
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A Machine Learning Model and Evaluation of Text Mining for Protein Function Prediction (2011) Björne Jari, Salakoski Tapio
(
A4 Article in conference proceedings)

Drug-Drug Interaction Extraction with RLS and SVM Classifiers (2011)
CEUR Workshop Proceedings
Jari Björne, Antti Airola, Tapio Pahikkala, Tapio Salakoski
(
A4 Article in conference proceedings)

EXTRACTING CONTEXTUALIZED COMPLEX BIOLOGICAL EVENTS WITH RICH GRAPH-BASED FEATURE SETS (2011)
Computational Intelligence
Bjorne J, Heimonen J, Ginter F, Airola A, Pahikkala T, Salakoski T
(
A1 Journal article – refereed)

Generalizing Biomedical Event Extraction (2011) Björne Jari, Salakoski Tapio
(
A4 Article in conference proceedings)

U-Compare bio-event meta-service: compatible BioNLP event extraction services (2011)
BMC Bioinformatics
Kano Y, Björne J, Ginter F, Salakoski T, Buyko E, Hahn U, Cohen K, Verspoor K, Roeder C, Hunter L, Kilicoglu H, Bergler S, Landeghem S, Parys T, {Van de Peer} Y, Miwa M, Ananiadou S, Neves M, Pascual-Montano A, Ozgur A, Radev D, Riedel S, Saetre R, Chun H, Kim J, Pyysalo S, Ohta T, Tsujii J
(
A1 Journal article – refereed)

Complex Event Extraction at {PubMed} Scale (2010)
Bioinformatics
Björne J, Ginter F, Pyysalo S, Tsujii J, Salakoski T
(
A1 Journal article – refereed)

Reconstruction of Semantic Relationships from Their Projections in Biomolecular Domain (2010) Proceedings of the 2010 Workshop on Biomedical Natural Language Processing Heimonen J, Björne J, Salakoski T
(
A4 Article in conference proceedings)

Scaling up Biomedical Event Extraction to the Entire {PubMed} (2010) Proceedings of the 2010 Workshop on Biomedical Natural Language Processing (BioNLP'10) Björne J, Ginter F, Pyysalo S, Tsujii J, Salakoski T
(
A4 Article in conference proceedings)

Extracting Complex Biological Events with Rich Graph-Based Feature Sets (2009) Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task Björne J, Heimonen J, Ginter F, Airola A, Pahikkala T, Salakoski T
(
A4 Article in conference proceedings)

A Graph Kernel for Protein-Protein Interaction Extraction (2008) Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing (BioNLP 2008) Airola A, Pyysalo S, Björne J, Pahikkala T, Ginter F, Salakoski T
(
A4 Article in conference proceedings)

All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning (2008)
BMC Bioinformatics
Airola A, Pyysalo S, Bjorne J, Pahikkala T, Ginter F, Salakoski T
(
A1 Journal article – refereed)

Comparative analysis of five protein-protein interaction corpora (2008)
BMC Bioinformatics
Pyysalo S, Airola A, Heimonen J, Bjorne J, Ginter F, Salakoski T
(
A1 Journal article – refereed)

BioInfer: a corpus for information extraction in the biomedical domain (2007)
BMC Bioinformatics
Pyysalo S, Ginter F, Heimonen J, Bjorne J, Boberg J, Jarvinen J, Salakoski T
(
A1 Journal article – refereed)


Last updated on 2019-20-04 at 02:23