Tapio Lönnberg
PhD

Postdoctoral Researcher, Biotekniikan keskuksen yhteiset (Turku Centre for Biotechnology)

taplon@utu.fi






Areas of expertise
Single-cell genomics, immunology

Publications

Single-cell immune profiling reveals new insights into colorectal cancer (2019)
Immunology and Cell Biology
Lönnberg T., Stubbington M.J.T.
(
B1 Journal article)

Global and targeted approaches to single-cell transcriptome characterization (2018)
Briefings in Functional Genomics
Aleksandra A. Kolodziejczyk, Tapio Lönnberg
(
A2 Review article in a scientific journal)

Single-cell RNA-sequencing resolves self-antigen expression during mTEC development (2018)
Scientific Reports
Ricardo J. Miragaia, Xiuwei Zhang, Tomás Gomes, Valentine Svensson, Tomislav Ilicic, Johan Henriksson, Gozde Kar, Tapio Lönnberg
(
A1 Journal article – refereed)

A practical guide to single-cell RNA- sequencing for biomedical research and clinical applications (2017)
Genome Medicine
Ashraful Haque, Jessica Engel, Sarah A. Teichmann, Tapio Lönnberg
(
A2 Review article in a scientific journal)

Single-cell RNA-seq and computational analysis using temporal mixture modeling resolves TH1/TFH fate bifurcation in malaria (2017)
Science Immunology
Tapio Lönnberg, Valentine Svensson, Kylie R. James, Daniel Fernandez-Ruiz, Ismail Sebina, Ruddy Montandon, Megan S. F. Soon, Lily G. Fogg, Arya Sheela Nair, Urijah N. Liligeto, Michael J. T. Stubbington, Lam-Ha Ly, Frederik Otzen Bagger, Max Zwiessele, Neil D. Lawrence, Fernando Souza-Fonseca-Guimaraes, Patrick T. Bunn, Christian R. Engwerda, William R. Heath, Oliver Billker, Oliver Stegle, Ashraful Haque, and Sarah A. Teichmann
(
A1 Journal article – refereed)

Cutting-edge single-cell genomics and modelling in immunology (2016)
Immunology and Cell Biology
Proserpio V, Lonnberg T
(
B1 Journal article)

Single-cell analysis of CD4+T-cell differentiation reveals three major cell states and progressive acceleration of proliferation (2016)
GENOME BIOLOGY
Proserpio V, Piccolo A, Haim-Vilmovsky L, Kar G, Lonnberg T, Svensson V, Pramanik J, Natarajan KN, Zhai WC, Zhang XW, Donati G, Kayikci M, Kotar J, McKenzie ANJ, Montandon R, Billker O, Woodhouse S, Cicuta P, Nicodemi M, Teichmann SA
(
A1 Journal article – refereed)

Single-cell technologies are revolutionizing the approach to rare cells (2016)
Immunology and Cell Biology
Proserpio V, Lonnberg T
(
A1 Journal article – refereed)

T cell fate and clonality inference from single-cell transcriptomes (2016)
Nature Methods
Stubbington MJT, Lonnberg T, Proserpio V, Clare S, Speak A, Dougan G, Teichmann SA
(
A1 Journal article – refereed)

From a gene-centric to whole-proteome view of differentiation of T helper cell subsets (2013)
Briefings in Functional Genomics
Lonnberg T, Chen Z, Lahesmaa R
(
A1 Journal article – refereed)

Global Chromatin State Analysis Reveals Lineage-Specific Enhancers during the Initiation of Human T helper 1 and T helper 2 Cell Polarization (2013)
Immunity
Hawkins RD, Larjo A, Tripathi SK, Wagner U, Luu Y, Lönnberg T, Raghav SK, Lee LK, Lund R, Ren B, Lähdesmäki H, Lahesmaa R
(
A1 Journal article – refereed)

Holistic Systems Biology Approaches to Molecular Mechanisms of Human Helper T Cell Differentiation to Functionally Distinct Subsets (2013)
Scandinavian Journal of Immunology
Chen Z, Lonnberg T, Lahesmaa R
(
A1 Journal article – refereed)

An integrative computational systems biology approach identifies differentially regulated dynamic transcriptome signatures which drive the initiation of human T helper cell differentiation (2012)
BMC Genomics
Äijö Tarmo, Edelman Sanna M, Lönnberg Tapio, Larjo Antti, Kallionpää Henna, Tuomela Soile, Engström Emilia, Lahesmaa Riitta, Lähdesmäki Harri
(
A1 Journal article – refereed)


Last updated on 2018-17-01 at 12:30

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