Sampo Pyysalo


Associate Professor, Language and Speech Technology (Department of Future Technologies)

sampo.pyysalo@utu.fi







Publications

CoNLL 2017 Shared Task: Multilingual Parsing from Raw Text to Universal Dependencies (2017) Proceedings of the CoNLL 2017 Shared Task: Multilingual Parsing from Raw Text to Universal Dependencies Zeman D, Popel M, Straka M, Hajič J, Nivre J, Ginter F, Luotolahti J, Pyysalo S, Petrov S, Potthast M, Tyers F, Badmaeva E, Gökırmak M, Nedoluzhko A, Cinková S, Hajič jr. J, Hlaváčová J, Kettnerová V, Urešová Z, Kanerva J, Ojala S, Missilä A, Manning C, Schuster S, Reddy S, Taji D, Habash N, Leung H, Marneffe M, Sanguinetti M, Simi M, Kanayama H, Paiva V, Droganova K, Martínez Alonso H, Uszkoreit H, Macketanz V, Burchardt A, Harris K, Marheinecke K, Rehm G, Kayadelen T, Attia M, Elkahky A, Yu Z, Pitler E, Lertpradit S, Mandl M, Kirchner J, Fernandez Alcalde H, Strnadova J, Banerjee E, Manurung R, Stella A, Shimada A, Kwak S, Mendonçca G, Lando T, Nitisaroj R, Li J
(
A4 Article in conference proceedings)

Cell line name recognition in support of the identification of synthetic lethality in cancer from text – Cell line name recognition (2016)
Bioinformatics
Suwisa Kaewphan, Sofie Van Landeghem, Tomoko Ohta, Yves Van de Peer, Filip Ginter, Sampo Pyysalo
(
A1 Journal article – refereed)

Deep Learning With Minimal Training Data: TurkuNLP Entry in the BioNLP Shared Task 2016 (2016) Proceedings of the 4th BioNLP Shared Task Workshop Farrokh Mehryary, Jari Bjorne, Sampo Pyysalo, Tapio Salakoski, Filip Ginter
(
A4 Article in conference proceedings)

Overview of the Cancer Genetics and Pathway Curation tasks of BioNLP Shared Task 2013 (2015)
BMC Bioinformatics
Pyysalo S, Ohta T, Rak R, Rowley A, Chun HW, Jung SJ, Choi SP, Tsujii J, Ananiadou S
(
A1 Journal article – refereed)

SETS: Scalable and Efficient Tree Search in Dependency Graphs (2015) Proceedings of the 2015 Conference of the North American Chapter of the Association for Computational Linguistics: Demonstrations Juhani Luotolahti, Jenna Kanerva, Sampo Pyysalo, Filip Ginter
(
A4 Article in conference proceedings)

Sharing annotations better: RESTful Open Annotation (2015) Proceedings of ACL-IJCNLP 2015 System Demonstrations Pyysalo Sampo, Campos Jorge, Cejuela Juan Miguel, Ginter Filip, Hakala Kai, Li Chen, Stenetorp Pontus, Jensen Lars Juhl
(
A4 Article in conference proceedings)

Towards the Classification of the Finnish Internet Parsebank: Detecting Translations and Informality (2015) 20th Nordic Conference of Computational Linguistics (Nodalida 2015) Laippala Veronika, Kanerva Jenna, Pyysalo Sampo, Missilä Anna, Salakoski Tapio, Ginter Filip
(
A4 Article in conference proceedings)

Towards Universal Web Parsebanks (2015) Proceedings of the International Conference on Dependency Linguistics (Depling'15) Juhani Luotolahti, Jenna Kanerva, Veronika Laippala, Sampo Pyysalo , Filip Ginter
(
A4 Article in conference proceedings)

Universal Dependencies for Finnish (2015) Proceedings of the 20th Nordic Conference of Computational Linguistics (NODALIDA 2015) Sampo Pyysalo, Jenna Kanerva, Anna Missilä, Veronika Laippala, Filip Ginter
(
A4 Article in conference proceedings)

Distributional Semantic Resources for Biomedical Text Processing (2013) Proceedings of the 5th International Symposium on Languages in Biology and Medicine (LBM '13) Pyysalo Sampo, Ginter Filip, Moen Hans, Salakoski Tapio, Ananiadou Sophia
(
A4 Article in conference proceedings)

Large-scale event extraction from literature with multi-level gene normalization (2013)
PLoS ONE
Van Landeghem Sofie, Björne Jari, Wei Chih-Hsuan, Hakala Kai, Pyysalo Sampo, Ananiadou Sophia, Kao Hung-Yu, Lu Zhiyong, Salakoski Tapio, Van de Peer Yves, Ginter Filip
(
A1 Journal article – refereed)

Matrix representations, linear transformations, and kernels for disambiguation in natural language (2009)
Machine Learning
Pahikkala T, Pyysalo S, Boberg J, Jarvinen J, Salakoski T
(
A1 Journal article – refereed)

A Graph Kernel for Protein-Protein Interaction Extraction (2008) Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing (BioNLP 2008) Airola A, Pyysalo S, Björne J, Pahikkala T, Ginter F, Salakoski T
(
A4 Article in conference proceedings)

Comparative analysis of five protein-protein interaction corpora (2008)
BMC Bioinformatics
Pyysalo S, Airola A, Heimonen J, Bjorne J, Ginter F, Salakoski T
(
A1 Journal article – refereed)

Machine Learning to Automate the Assignment of Diagnosis Codes to Free-text Radiology Reports: a Method Description (2008) Proceedings of the ICML/UAI workshop on Machine Learning in health care applications Suominen H, Ginter F, Pyysalo S, Airola A, Pahikkala T, Salanterä S, Salakoski T
(
A4 Article in conference proceedings)

Regularized Least-Squares for parse ranking (2005)
Lecture Notes in Computer Science
Proceedings of the 6th International Symposium on Intelligent Data Analysis Tsivtsivadze E, Pahikkala T, Pyysalo S, Boberg J, Myllari A, Salakoski T
(
A4 Article in conference proceedings)


Last updated on 2017-17-11 at 02:47

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