Farrokh Mehryary


Language and Speech Technology (Department of Future Technologies)
Doctoral Student, Computer Science (Department of Future Technologies)

farmeh@utu.fi
+358 2 333 7649
Vesilinnantie 5
Turku





Publications

Combining support vector machines and LSTM networks for chemical-protein relation extraction (2018) Proceedings of the BioCreative VI Workshop Farrokh​ Mehryary,​​ Jari​ Björne​,​ Tapio​ Salakoski​,​ Filip​ Ginter​
(
A4 Article in conference proceedings)

Data and systems for medication-related text classification and concept normalization from Twitter: insights from the Social Media Mining for Health (SMM4H)-2017 shared task (2018)
Journal of the American Medical Informatics Association
Abeed Sarker, Maksim Belousov, Jasper Friedrichs, Kai Hakala, Svetlana Kiritchenko, Farrokh Mehryary, Sifei Han, Tung Tran, Anthony Rios, Ramakanth Kavuluru, Berry de Bruijn, Filip Ginter, Debanjan Mahata, Saif M. Mohammad, Goran Nenadic, Graciela Gonzalez-Hernandez
(
A1 Journal article – refereed)

Potent pairing: ensemble of long short-term memory networks and support vector machine for chemical-protein relation extraction (2018)
Database: The Journal of Biological Databases and Curation
Farrokh Mehryary, Jari Björne, Tapio Salakoski, Filip Ginter
(
A1 Journal article – refereed)

TurkuNLP Entry for Interactive Bio-ID Assignment (2018) Proceedings of the BioCreative VI Workshop Suwisa Kaewphan, Farrokh Mehryary, Kai Hakala, Tapio Salakoski, Filip Ginter
(
A4 Article in conference proceedings)

Detecting mentions of pain and acute confusion in Finnish clinical text (2017) SIGBioMed Workshop on Biomedical Natural Language: Proceedings of the 16th BioNLP Workshop Hans Moen, Kai Hakala, Farrokh Mehryary, Laura-Maria Peltonen, Tapio Salakoski, Filip Ginter, Sanna Salanterä
(
A4 Article in conference proceedings)

End-to-End System for Bacteria Habitat Extraction (2017) SIGBioMed Workshop on Biomedical Natural Language: Proceedings of the 16th BioNLP Workshop Farrokh Mehryary, Kai Hakala, Suwisa Kaewphan, Jari Björne, Tapio Salakoski, Filip Ginter
(
A4 Article in conference proceedings)

Ensemble of Convolutional Neural Networks for Medicine Intake Recognition in Twitter (2017)
CEUR Workshop Proceedings
Proceedings of the 2nd Social Media Mining for Health Research and Applications Workshop (SMM4H 2017) Kai Hakala, Farrokh Mehryary, Hans Moen, Suwisa Kaewphan, Tapio Salakoski, Filip Ginter
(
A4 Article in conference proceedings)

An expanded evaluation of protein function prediction methods shows an improvement in accuracy (2016)
GENOME BIOLOGY
Jiang YX, Oron TR, Clark WT, Bankapur AR, D'Andrea D, Lepore R, Funk CS, Kahanda I, Verspoor KM, Ben-Hur A, Koo DCE, Penfold-Brown D, Shasha D, Youngs N, Bonneau R, Lin A, Sahraeian SME, Martelli PL, Profiti G, Casadio R, Cao RZ, Zhong Z, Cheng JL, Altenhoff A, Skunca N, Dessimoz C, Dogan T, Hakala K, Kaewphan S, Mehryary F, Salakoski T, Ginter F, Fang H, Smithers B, Oates M, Gough J, Toronen P, Koskinen P, Holm L, Chen CT, Hsu WL, Bryson K, Cozzetto D, Minneci F, Jones DT, Chapman S, Dukka BKC, Khan IK, Kihara D, Ofer D, Rappoport N, Stern A, Cibrian-Uhalte E, Denny P, Foulger RE, Hieta R, Legge D, Lovering RC, Magrane M, Melidoni AN, Mutowo-Meullenet P, Pichler K, Shypitsyna A, Li B, Zakeri P, ElShal S, Tranchevent LC, Das S, Dawson NL, Lee D, Lees JG, Sillitoe I, Bhat P, Nepusz T, Romero AE, Sasidharan R, Yang HX, Paccanaro A, Gillis J, Sedeno-Cortes AE, Pavlidis P, Feng S, Cejuela JM, Goldberg T, Hamp T, Richter L, Salamov A, Gabaldon T, Marcet-Houben M, Supek F, Gong QT, Ning W, Zhou YP, Tian WD, Falda M, Fontana P, Lavezzo E, Toppo S, Ferrari C, Giollo M, Piovesan D, Tosatto SCE, del Pozo A, Fernandez JM, Maietta P, Valencia A, Tress ML, Benso A, Di Carlo S, Politano G, Savino A, Rehman HU, Re M, Mesiti M, Valentini G, Bargsten JW, van Dijk ADJ, Gemovic B, Glisic S, Perovic V, Veljkovic V, Veljkovic N, Almeida-e-Silva DC, Vencio RZN, Sharan M, Vogel J, Kansakar L, Zhang S, Vucetic S, Wang Z, Sternberg MJE, Wass MN, Huntley RP, Martin MJ, O'Donovan C, Robinson PN, Moreau Y, Tramontano A, Babbitt PC, Brenner SE, Linial M, Orengo CA, Rost B, Greene CS, Mooney SD, Friedberg I, Radivojac P
(
A1 Journal article – refereed)

Deep Learning With Minimal Training Data: TurkuNLP Entry in the BioNLP Shared Task 2016 (2016) Proceedings of the 4th BioNLP Shared Task Workshop Farrokh Mehryary, Jari Bjorne, Sampo Pyysalo, Tapio Salakoski, Filip Ginter
(
A4 Article in conference proceedings)

Filtering large-scale event collections using a combination of supervised and unsupervised learning for event trigger classification (2016)
Journal of Biomedical Semantics
Mehryary F, Kaewphan S, Hakala K, Ginter F
(
B1 Journal article)

Eliminating Incorrect Events from Large‐Scale Event Networks by Trigger Word Clustering and Pruning (2014) Proceedings of the 6th International Symposium on Semantic Mining in Biomedicine (SMBM 2014) Farrokh Mehryary, Suwisa Kaewphan, Kai Hakala, Filip Ginter
(
A4 Article in conference proceedings)

Hypothesis Generation in Large-Scale Event Networks (2013) Proceedings of the 5th International Symposium on Languages in Biology and Medicine (LBM'13) Hakala Kai, Mehryary Farrokh, Kaewphan Suwisa, Ginter Filip
(
A4 Article in conference proceedings)


Last updated on 2019-19-06 at 02:23