Tomi Suomi


Doctoral Candidate, Centre for Biotechnology (Turku Centre for Biotechnology)
Doctoral Student, Computer Science (Department of Future Technologies)
Medical Bioinformatics Centre
tomi.suomi@utu.fi
+358 29 450 3803
Tykistökatu 6
Turku



Publications

A crowdsourced analysis to identify ab initio molecular signatures predictive of susceptibility to viral infection (2018)
Nature Communications
Slim Fourati, Aarthi Talla, Mehrad Mahmoudian, Joshua G. Burkhart, Riku Klén, Ricardo Henao, Thomas Yu, Zafer Aydın, Ka Yee Yeung, Mehmet Eren Ahsen, Reem Almugbel, Samad Jahandideh, Xiao Liang, Torbjörn E.M. Nordling, Motoki Shiga, Ana Stanescu, Robert Vogel, The Respiratory Viral DREAM Challenge Consortium, Gaurav Pandey, Christopher Chiu, Micah T. McClain, Christopher W. Woods, Geoffrey S. Ginsburg, Laura L. Elo, Ephraim L. Tsalik, Lara M. Mangravite, Solveig K. Sieberts
(
A1 Journal article – refereed)

A systematic evaluation of normalization methods in quantitative label-free proteomics (2018)
Briefings in Bioinformatics
Tommi Välikangas, Tomi Suomi, Laura L. Elo
(
A1 Journal article – refereed)

Phosphonormalizer: an R package for normalization of MS-based label-free phosphoproteomics (2018)
Bioinformatics
Sohrab Saraei, Tomi Suomi, Otto Kauko, Laura L. Elo
(
A1 Journal article – refereed)

SimPhospho: a software tool enabling confident phosphosite assignment (2018)
Bioinformatics
Veronika Suni, Tomi Suomi, Tomoya Tsubosaka, Susumu Y. Imanishi, Laura L. Elo, Garry L. Corthals
(
A1 Journal article – refereed)

Accurate detection of differential expression and splicing using low-level features (2017)
Methods in Molecular Biology
Eukaryotic transcriptional and post-transcriptional gene expression regulation Suomi Tomi, Elo Laura L
(
A3 Book chapter)

A comprehensive evaluation of popular proteomics software workflows for label-free proteome quantification and imputation (2017)
Briefings in Bioinformatics
Välikangas T, Suomi T, Elo LL
(
A1 Journal article – refereed)

Enhanced differential expression statistics for data-independent acquisition proteomics (2017)
Scientific Reports
Tomi Suomi, Laura L. Elo
(
A1 Journal article – refereed)

HIF prolyl hydroxylase PHD3 regulates translational machinery and glucose metabolism in clear cell renal cell carcinoma (2017)
Cancer and Metabolism
Miikkulainen P, Högel H, Rantanen K, Suomi T, Kouvonen P, Elo LL, Jaakkola PM
(
A1 Journal article – refereed)

ROTS: An R package for reproducibility-optimized statistical testing (2017)
PLoS Computational Biology
Tomi Suomi, Fatemeh Seyednasrollah, Maria K. Jaakkola, Thomas Faux,
Laura L. Elo

(
A1 Journal article – refereed)

Brief Isoflurane Anesthesia Produces Prominent Phosphoproteomic Changes in the Adult Mouse Hippocampus (2016)
ACS Chemical Neuroscience
Kohtala S, Theilmann W, Suomi T, Wigren HK, Porkka-Heiskanen T, Elo LL, Rokka A, Rantamäki T
(
A1 Journal article – refereed)

Optimization of Statistical Methods Impact on Quantitative Proteomics Data (2015)
Journal of Proteome Research
Pursiheimo A, Vehmas AP, Afzal S, Suomi T, Chand T, Strauss L, Poutanen M, Rokka A, Corthals GL, Elo LL,
(
A1 Journal article – refereed)

Using peptide-level proteomics data for detecting differentially expressed proteins. (2015)
Journal of Proteome Research
Suomi T, Corthals GL, Nevalainen OS, Elo LL.
(
A1 Journal article – refereed)

Cross-Correlation of Spectral Count Ranking to Validate Quantitative Proteome Measurements (2014)
Journal of Proteome Research
Olli Kannaste, Tomi Suomi, Jussi Salmi, Esa Uusipaikka, Olli Nevalainen, Garry L. Corthals
(
A1 Journal article – refereed)

Organizing the nozzle magazine of a gantry-type PCB assembly machine (2013)
International Journal of Advanced Manufacturing Technology
Knuutila T, Suomi T, Emet S, Johnsson M, Nevalainen OS
(
A1 Journal article – refereed)


Last updated on 2019-21-05 at 02:21