Kai Hakala

Doctoral student, Language and Speech Technology (Department of Future Technologies)
Doctoral candidate, Language and Speech Technology (Department of Future Technologies)

kahaka@utu.fi
+358 2 333 7649
Vesilinnantie 5
Turku




Publications

Detecting mentions of pain and acute confusion in Finnish clinical text (2017)
Hans Moen, Kai Hakala, Farrokh Mehryary, Laura-Maria Peltonen, Tapio Salakoski, Filip Ginter, Sanna Salanterä
(A4 Article in conference proceedings)

End-to-End System for Bacteria Habitat Extraction (2017)
Farrokh Mehryary, Kai Hakala, Suwisa Kaewphan, Jari Björne, Tapio Salakoski, Filip Ginter
(A4 Article in conference proceedings)

Ensemble of Convolutional Neural Networks for Medicine Intake Recognition in Twitter (2017)
CEUR Workshop Proceedings
Kai Hakala, Farrokh Mehryary, Hans Moen, Suwisa Kaewphan, Tapio Salakoski, Filip Ginter
(A4 Article in conference proceedings)

An expanded evaluation of protein function prediction methods shows an improvement in accuracy (2016)
GENOME BIOLOGY
Jiang YX, Oron TR, Clark WT, Bankapur AR, D'Andrea D, Lepore R, Funk CS, Kahanda I, Verspoor KM, Ben-Hur A, Koo DCE, Penfold-Brown D, Shasha D, Youngs N, Bonneau R, Lin A, Sahraeian SME, Martelli PL, Profiti G, Casadio R, Cao RZ, Zhong Z, Cheng JL, Altenhoff A, Skunca N, Dessimoz C, Dogan T, Hakala K, Kaewphan S, Mehryary F, Salakoski T, Ginter F, Fang H, Smithers B, Oates M, Gough J, Toronen P, Koskinen P, Holm L, Chen CT, Hsu WL, Bryson K, Cozzetto D, Minneci F, Jones DT, Chapman S, Dukka BKC, Khan IK, Kihara D, Ofer D, Rappoport N, Stern A, Cibrian-Uhalte E, Denny P, Foulger RE, Hieta R, Legge D, Lovering RC, Magrane M, Melidoni AN, Mutowo-Meullenet P, Pichler K, Shypitsyna A, Li B, Zakeri P, ElShal S, Tranchevent LC, Das S, Dawson NL, Lee D, Lees JG, Sillitoe I, Bhat P, Nepusz T, Romero AE, Sasidharan R, Yang HX, Paccanaro A, Gillis J, Sedeno-Cortes AE, Pavlidis P, Feng S, Cejuela JM, Goldberg T, Hamp T, Richter L, Salamov A, Gabaldon T, Marcet-Houben M, Supek F, Gong QT, Ning W, Zhou YP, Tian WD, Falda M, Fontana P, Lavezzo E, Toppo S, Ferrari C, Giollo M, Piovesan D, Tosatto SCE, del Pozo A, Fernandez JM, Maietta P, Valencia A, Tress ML, Benso A, Di Carlo S, Politano G, Savino A, Rehman HU, Re M, Mesiti M, Valentini G, Bargsten JW, van Dijk ADJ, Gemovic B, Glisic S, Perovic V, Veljkovic V, Veljkovic N, Almeida-e-Silva DC, Vencio RZN, Sharan M, Vogel J, Kansakar L, Zhang S, Vucetic S, Wang Z, Sternberg MJE, Wass MN, Huntley RP, Martin MJ, O'Donovan C, Robinson PN, Moreau Y, Tramontano A, Babbitt PC, Brenner SE, Linial M, Orengo CA, Rost B, Greene CS, Mooney SD, Friedberg I, Radivojac P
(A1 Journal article – refereed)

Filtering large-scale event collections using a combination of supervised and unsupervised learning for event trigger classification (2016)
Journal of Biomedical Semantics
Mehryary F, Kaewphan S, Hakala K, Ginter F
(B1 Journal article)

Syntactic analyses and named entity recognition for PubMed and. PubMed Central — up-to-the-minute (2016)
Kai Hakala, Suwisa Kaewphan, Tapio Salakoski, Filip Ginter
(A4 Article in conference proceedings)

Application of the EVEX resource to event extraction and network construction: Shared Task entry and result analysis (2015)
BMC Bioinformatics
Kai Hakala, Sofie Van Landeghem, Tapio Salakoski, Yves Van de Peer, Filip Ginter
(A1 Journal article – refereed)

Sharing annotations better: RESTful Open Annotation (2015)
Pyysalo Sampo, Campos Jorge, Cejuela Juan Miguel, Ginter Filip, Hakala Kai, Li Chen, Stenetorp Pontus, Jensen Lars Juhl
(A4 Article in conference proceedings)

UTU: Adapting Biomedical Event Extraction System to Disorder Attribute Detection (2015)
Kai Hakala
(A4 Article in conference proceedings)

Eliminating Incorrect Events from Large‐Scale Event Networks by Trigger Word Clustering and Pruning (2014)
Farrokh Mehryary, Suwisa Kaewphan, Kai Hakala, Filip Ginter
(A4 Article in conference proceedings)

UTU: Disease Mention Recognition and Normalization with CRFs and Vector Space Representations (2014)
Suwisa Kaewphan, Kai Hakaka, Filip Ginter
(A4 Article in conference proceedings)

EVEX in ST'13: Application of a large-scale text mining resource to event extraction and network construction (2013)
Kai Hakala, Sofie Van Landeghem, Tapio Salakoski, Yves Van de Peer, Filip Ginter
(A4 Article in conference proceedings)

Hypothesis Generation in Large-Scale Event Networks (2013)
Hakala Kai, Mehryary Farrokh, Kaewphan Suwisa, Ginter Filip
(A4 Article in conference proceedings)

Large-scale event extraction from literature with multi-level gene normalization (2013)
PLoS ONE
Van Landeghem Sofie, Björne Jari, Wei Chih-Hsuan, Hakala Kai, Pyysalo Sampo, Ananiadou Sophia, Kao Hung-Yu, Lu Zhiyong, Salakoski Tapio, Van de Peer Yves, Ginter Filip
(A1 Journal article – refereed)

CyEVEX: Literature-scale network integration and visualization through Cytoscape (2012)
Hakala Kai, Van Landeghem Sofie, Kaewphan Suwisa, Salakoski Tapio, Van de Peer Yves, Ginter Filip
(A4 Article in conference proceedings)

CyEVEX: Literature-scale network integration and visualization through Cytoscape (2012)
Hakala Kai, Van Landeghem Sofie, Kaewphan Suwisa, Salakoski Tapio, Van de Peer Yves, Ginter Filip
(A4 Article in conference proceedings)

{CyEVEX}: Literature-scale network integration and visualization through Cytoscape (2012)
Hakala K, Van Landeghem S, Kaewphan S, Salakoski T, {Van de Peer} Y, Ginter F
(A4 Article in conference proceedings)

Exploring Biomolecular Literature with {EVEX}: Connecting Genes through Events, Homology and Indirect Associations (2012)
Van Landeghem S, Hakala K, Rönnqvist S, Salakoski T, Peer Y, Ginter F
(A1 Journal article – refereed)




Last updated on 2018-13-04 at 01:49