Kai Hakala

Doctoral candidate, Bioinformatiikka (Tulevaisuuden teknologioiden laitos)
Doctoral candidate, Bioinformatiikka (Tulevaisuuden teknologioiden laitos)

kahaka@utu.fi
+358 2 333 7649
Vesilinnantie 5
Turku





Areas of expertise


Biography


Publications

An expanded evaluation of protein function prediction methods shows an improvement in accuracy (2016)
Jiang YX, Oron TR, Clark WT, Bankapur AR, D'Andrea D, Lepore R, Funk CS, Kahanda I, Verspoor KM, Ben-Hur A, Koo DCE, Penfold-Brown D, Shasha D, Youngs N, Bonneau R, Lin A, Sahraeian SME, Martelli PL, Profiti G, Casadio R, Cao RZ, Zhong Z, Cheng JL, Altenhoff A, Skunca N, Dessimoz C, Dogan T, Hakala K, Kaewphan S, Mehryary F, Salakoski T, Ginter F, Fang H, Smithers B, Oates M, Gough J, Toronen P, Koskinen P, Holm L, Chen CT, Hsu WL, Bryson K, Cozzetto D, Minneci F, Jones DT, Chapman S, Dukka BKC, Khan IK, Kihara D, Ofer D, Rappoport N, Stern A, Cibrian-Uhalte E, Denny P, Foulger RE, Hieta R, Legge D, Lovering RC, Magrane M, Melidoni AN, Mutowo-Meullenet P, Pichler K, Shypitsyna A, Li B, Zakeri P, ElShal S, Tranchevent LC, Das S, Dawson NL, Lee D, Lees JG, Sillitoe I, Bhat P, Nepusz T, Romero AE, Sasidharan R, Yang HX, Paccanaro A, Gillis J, Sedeno-Cortes AE, Pavlidis P, Feng S, Cejuela JM, Goldberg T, Hamp T, Richter L, Salamov A, Gabaldon T, Marcet-Houben M, Supek F, Gong QT, Ning W, Zhou YP, Tian WD, Falda M, Fontana P, Lavezzo E, Toppo S, Ferrari C, Giollo M, Piovesan D, Tosatto SCE, del Pozo A, Fernandez JM, Maietta P, Valencia A, Tress ML, Benso A, Di Carlo S, Politano G, Savino A, Rehman HU, Re M, Mesiti M, Valentini G, Bargsten JW, van Dijk ADJ, Gemovic B, Glisic S, Perovic V, Veljkovic V, Veljkovic N, Almeida-e-Silva DC, Vencio RZN, Sharan M, Vogel J, Kansakar L, Zhang S, Vucetic S, Wang Z, Sternberg MJE, Wass MN, Huntley RP, Martin MJ, O'Donovan C, Robinson PN, Moreau Y, Tramontano A, Babbitt PC, Brenner SE, Linial M, Orengo CA, Rost B, Greene CS, Mooney SD, Friedberg I, Radivojac P
(A1 Journal article (refereed))

Filtering large-scale event collections using a combination of supervised and unsupervised learning for event trigger classification (2016)
Journal of Biomedical Semantics
Mehryary F, Kaewphan S, Hakala K, Ginter F
(B1 Non-refereed journal articles)

Syntactic analyses and named entity recognition for PubMed and. PubMed Central — up-to-the-minute (2016)
Kai Hakala, Suwisa Kaewphan, Tapio Salakoski, Filip Ginter
(A4 Conference proceedings)

Application of the EVEX resource to event extraction and network construction: Shared Task entry and result analysis (2015)
BMC Bioinformatics
Kai Hakala, Sofie Van Landeghem, Tapio Salakoski, Yves Van de Peer, Filip Ginter
(A1 Journal article (refereed))

Sharing annotations better: RESTful Open Annotation (2015)
Pyysalo Sampo, Campos Jorge, Cejuela Juan Miguel, Ginter Filip, Hakala Kai, Li Chen, Stenetorp Pontus, Jensen Lars Juhl
(A4 Conference proceedings)

Eliminating Incorrect Events from Large‐Scale Event Networks by Trigger Word Clustering and Pruning (2014)
Farrokh Mehryary, Suwisa Kaewphan, Kai Hakala, Filip Ginter
(A4 Conference proceedings)

UTU: Disease Mention Recognition and Normalization with CRFs and Vector Space Representations (2014)
Suwisa Kaewphan, Kai Hakaka, Filip Ginter
(A4 Conference proceedings)




Last updated on 2017-13-09 at 07:21